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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC105872966P9
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Microcebus murinus
Coordinates chr10:56484796-56485170  UCSC
Strand -
Parental Sequence XM_012767420.2
Parental seq. overlap 311 bp
Parental seq. overlap (%) 54.9%
Genomic Region Intragenic (LOC105871173)
Intragenic (TEK)
Retrocopy Summary LOC105872966P9, located on chr10:56484796-56485170, is a retrocopy of the parental gene LOC105872966. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC105872966
Full Name N/A
Also known as RPL36A
Coordinate chrX:24689822-24696596
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL36AP74
Chimpanzee Pan troglodytes RPL36AP22
Bonobo Pan paniscus LOC100993427P20
Gorilla Gorilla gorilla LOC101135216P20
Orangutan Pongo abelii RPL36AP21
Gibbon Nomascus leucogenys LOC100595785P16
Green monkey Chlorocebus sabaeus RPL36AP17
Crab-eating macaque Macaca fascicularis LOC102125097P32
Rhesus Macaca mulatta LOC703365P31
Baboon Papio anubis LOC101006882P29
Golden snub-nosed monkey Rhinopithecus roxellana LOC104659583P35
Marmoset Callithrix jacchus LOC100407306P1
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC105872966P9
GCAAACATGTTGAGCATTCCTAAAACCCACCAGACTTTCTGGAAGACCTGTGGCAAGCACCAACCCCACAAAGTGACACAAGAAAAGTAATTTGCAAGCATTCTCTGTGTGCCCAGGGAAAGTGACAGTATGACAGGAAGCAGAGTGGCTATGGTGGGTGGTAGAGCTAAGCCAATTTTCTGGAAAAAGGCTAAAACTACAAAAGAAGATTATGCTGAGACTTGAGTGCATTAAGCCAACTGCAGAGCTAAGAGAATGCTGGCTATTAAGAGACACAAGTGTTGGGGACTCGGAGGAGATGAGAAGAGAAGGGACCAAGTAATCTAGTTCCAAGCTTCATCTTTTGTTATGAAGATAATAAAATCTTGAGGTTAT
>XM_012767420.2
AGCCCTCCCTTAAGCTCCCGCCCGCGGCTCCGAATCCAGTCCTCTCCGCCGCTGGACGGCGCTACGCACTGAGCCTTAGACTCTATGATCGCTCCCACCGACTCCCATGAGGAAGTGCGACAAGGCACCGCCTATATACTTCCGTTTCCGGCCTGGCCTCTTTCTTTCGTTGCCGATAGCGCGCACGCAAACATGGTGAACGTTCCTAAAACCCGTCGGACTTTCTGTAAGAAATGTGGCAAGCACCAACCCCACAAAGTGACACAGTACAAGAAGGGCAAGGATTCTCTGTATGCCCAGGGAAAGCGGCGTTATGATAGGAAGCAGAGTGGCTATGGTGGGCAGACCAAGCCGATTTTCCGGAAAAAGGTTAgctaaaactacaaaaaaattgtGCTGAGGCTTGAGTGTGTCGAGCCCAACTGCAGATCTAAGAGAATGCTGGCTATTAAGAGATGCAAGCATTTTGAACTGGGAGGAGATAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTAAGCGTCTTTTGTTTATTATGAAGACGATAAAATCTTGATGTTAC

Publications

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