Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HNRNPCP7
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr16:12137962-12139504  UCSC
Strand +
Parental Sequence NM_001132312.2
Parental seq. overlap 1449 bp
Parental seq. overlap (%) 81.7%
Genomic Region Intergenic
Retrocopy Summary HNRNPCP7, located on chr16:12137962-12139504, is a retrocopy of the parental gene HNRNPC. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HNRNPC
Full Name N/A
Also known as HNRPC
Coordinate chr14:1823252-1883038
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HNRNPCP4
Chimpanzee Pan troglodytes HNRNPCP7
Bonobo Pan paniscus HNRNPCP8
Gorilla Gorilla gorilla HNRNPCP8
Green monkey Chlorocebus sabaeus HNRNPCP4
Crab-eating macaque Macaca fascicularis HNRNPCP11
Rhesus Macaca mulatta HNRNPCP11
Baboon Papio anubis HNRNPCP10
Golden snub-nosed monkey Rhinopithecus roxellana LOC104656262P15
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HNRNPCP7
GGAGATGAAGACTGAGCGGTTGTGGCCGCATTACTGACCTCAAGCAGCAGTTGGCTTCTCCACGTAGAACCCAGGAGTAGGAGACTCAGAATTGAAACTCTTCTGCCTGCCCGCTCCTGTGAGACTTTTTTGATCTTCAGCTACATTTTCGGCTTTGTGAGAAACCTTATCATCAAACACAATGGCCAGCAATGTTACCAACAAGACAGATCCTCACTCCATGAACTCGTGTTCGTTGGGAATCTCAACACTCTTGTGGTCAAGAAATCTGATGTGGAGGCAATCTTTTAGAAGTATGGCAAAATTGTGGGCTGCGCTGTTCTTAAGGGATTTGTTTTCATTCAATATGTTAATGAGACAAATGCCCGGGCTGCTGTAGCAGGAGGGGATGGCAGAATAATCGCTGGCCAGGTTTTAGATAGTAACCTGGCTGCAGAGCCAAAAGTGAACCAAGGAAAAGCAGGTATGAAATGATCAGCGGTGGAGACGTACAGGTCAGAAACAGAACACCCTTCTCCATCCCTCTACTCAGCTCCTCTTTTGACTTGGACTATGACTTTCAACGGGACTATGATAGGATGTACAGTTACTCAGCACGTGTACCTCCTCCTCCTCCTATTGCTCGGGCTGTAGTGCCCTTGAAAAGTCAGCGTGTATCAGGAAACACCTCACAAAGGGGCAAAAGTGGCTTCAATTCTAAGAGTGGACAGCGGGGATCTTCCAAGTCTGGAAAGTTGAAAGGAGATGACCTTCAGGCCATTAAGAAGGAGTTGACCCAGATAAAACAAAAAGTGGATTCTCTCCTGGAAGACTTGGAAAAAAGGAAAAGAAACAGAGCAGACAAGCAGTAGAGATGAAGAACGATAAGTCAGAAGAGAAGCAGAGCAGCAGCTCACATGAGACTCATGTGAAGATAGAGTCTGAAGGTGGTGCAGATGACTCTGCTGAGGAGAGGGACCTACTGGATGATGAGGATAATGAAGATTGGGGGATGACCAGCTGGAGTTGATCAAGGATGATGAAAAAGAGGCTGAGGAAGGAGAGGATGACAGAGACAGCACCAATGGTGAAGATGGCTCTTAAGCACATGGTGGGGCTTAGAAATCTTATCCCATTATTTCTTTACCTAGGTGCTTGTCTAAGATCAAATTTTTCACCAGATCCTCTCCTCTAGTATCTTCAGCACATGCTCACTGTCCTCCTCACCCTTGTCCTTCCCATGTTCACTAATTCATATTACCCTGCGCCTAGTCCCATTTTCACTTCCTTTGACACTTCTAGTAGTTTTGTTGTCTTACCCTGTAATTTTTGCTTTTAATTTTGATATCTCTTTATGACTTTAACAATAAAAAGGATGTATGGTGTTATCAACTGCCTCCAAAATAATATCTTGTCTTGCAGGGAGTACAGTTCTTTTCATTCATACGTAAGTTCAGTAGTTGCTTCCCTAACTGCAAAGGCAATCTCATTGAGTTGAGTAGCTCCTGAAAGCAGCTTTGAGTTCGAAGTATGTGTGTTACTCCCCTACATTAGTGTGCTGTGT
>NM_001132312.2
CATTTTGTGAAGAGACGAAGACTGAGCGGTTGTGGCCGCTTTGCCGACCTCCAGCAGCAGTCGGCTTCTCCACCCAGAACCCGGGAGTAGGAGACTCAGAATCGAATCTCTTCTCCCTCCCCCTCTTGTGAGATTTTTTTGATCTTCAGCTACATTTTCGGCTTTGTGAGAAACCTTACCATCAAACACAATGGCCAGCAACGTTACCAACAAGACAGATCCTCGCTCCATGAACTCCCGTGTATTCATTGGGAATCTCAACACTCTTGTGGTCAAGAAATCTGATGTGGAGGCAATCTTTTCGAAGTATGGCAAAATTGTGGGCTGCTCTGTTCATAAGGGCTTTGCCTTCGTTCAATATGTTAATGAGAGAAATGCCCGGGCTGCTGTAGCAGGAGAGGATGGCAGAATGATTGCTGGCCAGGTTTTAGATATTAACCTGGCTGCAGAGCCAAAAGTGAACCGAGGAAAAGCAGGTGTGAAACGATCTGCAGCGGAGATGTACGGGTCAGTAACAGAACACCCTTCTCCGTCCCCTCTACTCAGCTCCTCTTTTGACTTGGACTATGACTTTCAACGGGACTATTATGATAGGATGTACAGTTACCCAGCACGTGTACCTCCTCCTCCTCCTATTGCTCGGGCTGTAGTGCCCTCGAAACGTCAGCGTGTATCAGGAAACACCTCACGAAGGGGCAAAAGTGGCTTCAATTCTAAGAGTGGACAGCGGGGATCTTCCAAGTCTGGAAAGTTGAAAGGAGATGACCTTCAGGCCATTAAGAAGGAGCTGACCCAGATAAAACAAAAAGTGGATTCTCTCCTGGAAAACCTGGAAAAAATTGAAAAGGAACAGAGCAAACAAGCAGTAGAGATGAAGAATGATAAGTCAGAAGAGGAGCAGAGCAGCAGCTCCGTGAAGAAAGATGAGACTAATGTGAAGATGGAGTCTGAGGGGGGTGCAGATGACTCTGCTGAAGAGGGGGACCTACTGGATGATGATGATAATGAAGATCGGGGGGATGACCAGCTGGAGTTGATCAAGGATGATGAAAAAGAGGCTGAGGAAGGAGAGGATGACAGAGACAGCGCCAATGGCGAGGATGACTCTTAAGCACATAGTGGGGTTTAGAAATCTTATCCCATTATTTCTTTACCTAGGCGCTTGTCTAAGATCAAATTTTTCACCAGATCCTCTCCCCTAGTATCTTCAGCACATGCTCACTGTTCTCCCCATCCTTGTCCTTCCCATGTTCATTAATTCATATTGCCCCGCGCCTAGTCCCATTTTCACTTCCTTTGACGCTCCTAGTAGTTTTGTTAAGTCTTACCCTGTAATTTTTGCTTTTAATTTTGATACCTCTTTATGACTTAACAATAAAAAGGATGTATGGTTTTTATCAACTGTCTCCAAAATAATCTCTTGTTATGCAGGGAGTACAGTTCTTTTCATTCATACATAAGTTCAGTAGTTGCTTCCCTAACTGCAAAGGCAATCTCATTTAGTTGAGTAGCTCTTGAAAGCAGCTTTGAGTTAGAAGTATGTGTGTTACACCCCCACATTAGTGTGCTGTGTGGGGCAGTTCAACACAAATGTAACAATGTATTTTTGTGAATGAGAGTTGGCATGTCAAATGCATCCTCTAGAAAAATAATTAGTGTTATAGTCTTAAGATTTGTTTTCTAAAGTTGATACTGTGGGTTATTTTTGTGAACAGCCTGATGTTTGGGACCTTTTTTCCTCAAAATAAACAAGTCCTTATTAAACCAGGAA

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