Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RAC1P1
Plot displaying the genomic locations of a retrocopy (in chr19) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Microcebus murinus
Coordinates chr19:62343035-62343586  UCSC
Strand +
Parental Sequence XM_020281468.1
Parental seq. overlap 440 bp
Parental seq. overlap (%) 18.3%
Genomic Region Intergenic
Retrocopy Summary RAC1P1, located on chr19:62343035-62343586, is a retrocopy of the parental gene RAC1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RAC1
Full Name N/A
Also known as -
Coordinate chr17:27673193-27701052
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RAC1P1
Chimpanzee Pan troglodytes RAC1P6
Bonobo Pan paniscus RAC1P5
Gorilla Gorilla gorilla RAC1P6
Orangutan Pongo abelii RAC1P6
Gibbon Nomascus leucogenys RAC1P3
Green monkey Chlorocebus sabaeus RAC1P3
Crab-eating macaque Macaca fascicularis RAC1P5
Rhesus Macaca mulatta RAC1P5
Baboon Papio anubis RAC1P4
Golden snub-nosed monkey Rhinopithecus roxellana RAC1P6
Marmoset Callithrix jacchus RAC1P7
Sloth Choloepus didactylus RAC1P12
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RAC1P1
AGCCATCACGTTGTGGTGGGAGAAGACGGAGTTGTAGACACAGCTTGCCTGCTGTTCAGTGATACACCAGTGCACTTCCTGGACAATATTTCCCCACCATCCTTGGCAACTATCTGTCAATGTTACAATAGATGGAAGATTGGTGAGTTTGGGCTTGTGGGATACAGCAGGACAAGGAGATTATGGTAGATTATACCTCCTATTGTACCTGCAAACAGATAAattcttaatttgcttttcccttgTGAGGGTGCACCATTTGAAAATTCCTGTGCAAAGTGCTATCCTTATATGCAATACCATCGTCCCCAAATGCCCATCATCCTACTGGGAACTAAATGTGATCTTAAGGGTGATAAAGACATGATTAGGAAACTGACAGAGAAGCAGCGGACTCCATCTTCTATCCACAGGGTTTAGCACAGCTAAGGAGATGAGTGCCCTAAAATAGTGCACCTAAAATGCTCAGCTCTCAGACAGGGAGGCCTACGACAGTGTTTGGGGGAGTTATTAAAACAGTAATCTGCCACCACCTGTCAAGAAGAAGAAGAG
>XM_020281468.1
CCGCGAGGGCGGAGCGGCCCCGCCCGGAGCCTGGAAGCAGTGGCGCCggcgcgggggaggggaggccggaTGTGAGTGGAGCGGCCATTTCCTGTTTCTCTGCAGTTTTCCTCAGCTTTGGGTGGTGGCCGCTGCCGGGCTTCGGCTTCCAGTCCGCGGAAGGCGAGGCGGCGTGGACAGCGGTCCCGGCATCCCGCACCCAGCCGCCAGTAGCTGCGCGCCCGCTCGCCGCGCCCCGAGCCCGCCGCTTCCCGCCTCACTGCCCGGCCGCCGCGGCCCAGCGAGCGGCCCAGATGCAGGCCATCAAGTGTGTGGTGGTCGGAGACGGagCTGTAGGTAAAACTTGCCTACTGATCAGTTATACAACCAATGCATTTCCTGGAGAATATATCCCTACTGTCTTTGATAATTATTCTGCCAATGTTATGGTAGATGGAAAACCGGTGAATCTGGGCTTATGGGATACGGCTGGACAAGAAGATTATGACAGATTACGCCCCCTATCCTATCCACAAACAgatgtattcttaatttgcttttcccttgTGAGTCCTGCATCATTTGAAAATGTCCGAGCAAAGTGGTATCCTGAAGTGCGACACCATTGTCCCAACACTCCCATCATCCTTGTGGGAACCAAACTTGATCTTAGGGATGATAAAGACACGATCGAGAAACTGAAGGAGAAGAAGCTGACTCCCATCACCTATCCGCAGGGTTTAGCCATGGCTAAAGAGATCGGTGCTGTAAAATACCTGGAGTGCTCGGCTCTCACACAGCGAGGCCTCAAGACAGTGTTTGACGAAGCTATCCGAGCAGTTCTCTGCCCACCACCTgtcaagaagaggaagagaaaatgccTGCTGTTGTAGATGTCCAAGCCCCTAGTTCTTGTTCCTGTCCCTTGAAACCTTTGTATGCTTTGCTCAAAAAATGTTGGAGCCTTTGCACTCAATGCCAAGTTTTGTTACAgattaatttttccataaaaccATTTTGAACcaattagtaattttaaagttttgtttgttcTAAATGTAAGAGTTCAGACTcacattctattaaaatttaGCCCTAAAATGACAAGCCTTCTTAAAGCCTTATTTTTCAAAAGCCCCCCTGTTCTTGTTCAGATTAAGAGTTGCCAAAATACCTTCTGAACTAAGTTGCATTGTTGTGCTATGAACACTAAGCACTAAACTGTTTAAAGACCTTTGTCTTTAAGAATACTGTAGCTTCTGAAGTTAGGAGATGCAGACACTTTCTAAGTAGTTTTCAGATATGTAAAGCATATCAGCCTCTTTAATGAATCGTTGCCATTTAATGcatcaataatttatatttgcccATGTTCGTTACATAACATTGTACTGTATATCATAATGGAATGAGTATAACAACTCAGCTCCTTTGGATCAGTCTTTTGGATTtcatagtgaatttttttttttaattgatcagCTTTTGCTGAGATTTTGAACAGAACTCTTATGTGTTTCCTCTAATGAAGTATTCTGCTCTTAGTTGTCGTGGGTGCGCTGGGGTGGAGTGTGTGAAACACTTAATGTGATCAAAGGATAAAGACAGTATTTTGACAAAATATGAAATGGAGATTAATTTACACTACATTGTACAAGGAATAATCAAACTGAATAAAAGTATCacaggtacaaattttaaaaggttaatttcttttaaatgcagatgATGAAGAAAGGTCGGTATTATCAGtaagtgtttttttcttaagcttttcctttctcttatacCTGCCATCCCTCCCCAGATTGGGCATTTAATTCATCTTCGAACTGGTCATTCCCTTAGTTGCTAACTTAGTGTTTTTCTATAGAACCCCTTTTTAATGAGCAATATGCCTCCTTGTATTATAAAATCTTTCTGATAATGCATTAGTTTTTTTTGTAGATTAGTAAAAGTGCTTTCCTGTTTTCATGTTACTTTATTCAGAGCTAATAAGTGCTTTCCTTAGTTTTCTAGTAACTAGGTGTAAAAATCATGTGTTGCAGcttcacagttttaaaaatattttagatattcttaAACTATGAACCTTCCTAACGTCACTGTCTTGCCAGAATACCAACACTGTCACTTGACTGAGACTGCCCCTCTTTACCTCACCCACATGGACACATGCTTCCTGTCGTTGCTTTGCCTAACAATGTTCCTTGGGTCTGAGGTTCTGTAAACTGTGCTAGTGCTAACAATGTTCTGTACAACTTAACTCACTGGCAAGAATACAATGTTGGACCTTTCAACCACtagaacaaaattttttaaattgacagttGCAGAATTGTGGAGTGTTTTTACATTGATCTTTTGCTAATGCAATTAGCAGTATGTTTTGCATGTATGACTTAATAAATCCTTGAATCACA

Publications

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