Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL32P7
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr23). Each line represents a retrocopy.
Species Microcebus murinus
Coordinates chr3:81603688-81603960  UCSC
Strand -
Parental Sequence XM_012785305.2
Parental seq. overlap 235 bp
Parental seq. overlap (%) 41.3%
Genomic Region Intergenic
Retrocopy Summary RPL32P7, located on chr3:81603688-81603960, is a retrocopy of the parental gene RPL32. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL32
Full Name N/A
Also known as -
Coordinate chr23:15915933-15920419
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL32P30
Chimpanzee Pan troglodytes RPL32P29
Bonobo Pan paniscus RPL32P28
Gorilla Gorilla gorilla RPL32P31
Orangutan Pongo abelii RPL32P33
Green monkey Chlorocebus sabaeus RPL32P36
Crab-eating macaque Macaca fascicularis RPL32P17
Rhesus Macaca mulatta RPL32P18
Baboon Papio anubis RPL32P15
Golden snub-nosed monkey Rhinopithecus roxellana RPL32P13
Marmoset Callithrix jacchus RPL32P34
Cat Felis catus RPL32P28
Greater horseshoe bat Rhinolophus ferrumequinum RPL32P20
Egyptian rousette Rousettus aegyptiacus RPL32P4
Gibbon Nomascus leucogenys Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL32P7
CAGAGGCATTGACAACAGGGTGTAGACAAAGTTTAAGTGCCACATCTTGATGACCAACATTGGTTATGAGACCAACAAGAAGACAAAGCACATGCTGCCCAGTGGGTTCTGGAAGTTTCTGATCCACCATGTCAAGGAGTTGTTAAGTGCTGCTGATATGCAATAAATCTTATGGTGCTGAGATTGCTTACATGTTTTCTCCATGAACTGCAAAGCCATAAAGGAAAGAGCAGCTCAGCTGGCCATGAGTCACCAATCCCAATGCCAGGCTGA
>XM_012785305.2
TTTTCCCTGCCAGGATCCTAGAGGTTACTTCCCATAAGCCCTTGAGAACCGCCTTCCGGTCTCTCTTCTTGGCGGTGCCTACGGAGGTGGCAGCCATCTCCTATTCGGCATCATGGCCGCCCTCAGACCCCTTGTGAAGCCCAAGATCGTCAAAAAGAGGACCAAGAAGTTTATCAGGCACCAGTCAGACCGATATGTCAAAATTAGTAACTGGCGGAAACCCAGAGGTATTGACAACAGGGTTCGGAGAAGATTCAAGGGCCAGATCTTGATGCCCAACATTGGTTATGGGagcaacaagaaaacaaagcacaTGCTGCCCAGTGGTTTCCGCAAGTTCCTGGTCCACAATGTCAAGGAGCTGGAAGTGCTGCTGATGTGCAACAAATCTTACTGTGCGGAGATTGCTCATAACGTTTCCTCCAAGAACCGCAAAGCCATTGTGGAAAGAGCAGCCCAGCTGGCCATCAGAGTCACCAATCCCAATGCCAGGCTGCGcagtgaagaaaatgaatagacaGCGCGTACGCACAttttgtgtttcaataaaaccataaaagttcCCA

Publications

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