Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SLC25A36P2
Plot displaying the genomic locations of a retrocopy (in chr22) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Microcebus murinus
Coordinates chr22:7251265-7251953  UCSC
Strand -
Parental Sequence XM_012762300.1
Parental seq. overlap 577 bp
Parental seq. overlap (%) 42.3%
Genomic Region Intragenic (ZNF582)
Retrocopy Summary SLC25A36P2, located on chr22:7251265-7251953, is a retrocopy of the parental gene SLC25A36. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SLC25A36
Full Name N/A
Also known as -
Coordinate chr1:50386844-50421488
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus SLC25A36P1
Crab-eating macaque Macaca fascicularis SLC25A36P2
Rhesus Macaca mulatta SLC25A36P2
Baboon Papio anubis SLC25A36P2
Golden snub-nosed monkey Rhinopithecus roxellana SLC25A36P1
Marmoset Callithrix jacchus SLC25A36P1
Pig Sus scrofa SLC25A36P1
Dolphin Tursiops truncatus LOC101319162P6
Horse Equus caballus SLC25A36P1
Panda Ailuropoda melanoleuca SLC25A36P1
Cat Felis catus SLC25A36P1
Greater horseshoe bat Rhinolophus ferrumequinum SLC25A36P1
Sloth Choloepus didactylus SLC25A36P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SLC25A36P2
taaaagtgacctTGGACAAAGAAGGACCTTGTTCCTTCTTTAATGGAATAAGCCAAATTTGCTGGGGATGGGCCCTTCCAGAGTAACATACTTTGCTACACATTGAAACTGCAAGGAAAAGCTGAATGGTGTATTTGACTGATTATACCCAGTACATGACTTCAGCTGCAGTGGCAGGTTTTCCTGCAATTACAGCAATAAACCCCATTTGGCTTAAAAAGACTCAGTTACAGCTTGATGTAAAGAACCATGGGGGAAGGTAAATGGGTGCTTTTGAATGTGTGTTCATAAAGTGTGTCAAAGAGATGGCCTTAGAGAGCTTCATAGGCACATGTCTGCTTCTTATGGTGGCATATCAGAGactgttattttgttatttgtgaaaatattaagcaaaaaataCCAGAATATAAGATTGCTTCTATAACAGAAGATGATAAACATGGTGAAAGAAGCATCAGATTTTGTGGGAATGATGCTGGCTGCTGTCACCTCAAAAACTTGTGCCACAATTATAATGCATCCACATGACACCGTAAGAACAAGACTGTGTAGAAAGGACACaaagtaaagatattttttcatatactctgTTTGGTTGTTCAAGAGAAAGGTTATGGGTCTCTTTACTATGGTCTAACAACCCATGTGGTGAGACAGTTTCCAAAAACAGTCATTATGATGGCCAT
>XM_012762300.1
GCCTGGGCGCTCTCGGGCTCGGGTCTGGGGCGCCGCGGTAGAGCAGGCGGCTGCGCGGCTGGAGCGCCGCGGGGAGGGCTGCGTCGGTTGCTTTCTGCAGCCGCGTCTCCGCCTGCTCCCCTCGCCGTCCCCGGGGCGTTGTGCGTCTCCAGTCTGGGATCCAAGCCGCCGGCCACAGCGGCCGGCCGGATCCGCGTCCCGCCTCAGCGCCCGGAGGACATGCTGGAGAGAGAATGAGCCAGAGAGACACGCTGGTGCATCTGTTTGCCGGGGGatGTGGTGGTACAGTGGGAGCTATTCTGACATGTCCACTGGAAGTTGTAAAAACACGACTGCAGTCATCTTCTGTGACGCTTTATATCTCTGAAGTTCATTTGAACACAATGGCTGGAGCCAGTGTCAACCGAGTAGTGTCTCCTGGACCTCTCCATTGCCTAAAggtGATCTTGGAAAAAGAAGGGCCTCGTTCCTTGTTTAGAGGATTGGGCCCCAATTTAGTGGGGGTGGCCCCATCCAGagCAATATACTTTGCTGCTTATTCAAACTGCAAGGAAAAGTTGAATGGTGTATTTGATCCTGATTCCACCCAGGTACACATGATTTCAGCTGCAATGGCAGgTTTTACCGCAATCACGGCAACCAACCCCATTTGGCTTATAAAGACTCGGTTACAGCTTGATGCAAGGAACCGTGGGGAAAAGCGAATGGGTGCTTTTGAATGTGTTCGTAAAGTGTATCAGACAGATGGACTTAGAGGATTTTATAGGGGCATGTCTGCTTCATATGCTGGCATATCAGAGACTGTAATCCATTTTGttatatatgaaagtataaagcAAAAACTACTGGAATATAAAATTGCTTCTACaatggaaaatgaagaagagTCTGTGAAAGAAGCATCAGATTTTGTGGGAATGATGCTAGCAGCTGCCACGTCAAAAACTTGTGCCACAACTATAGCATATCCACATGAAGTTATAAGAACAAGACTACGTGAAGAGGGAACAAAATATAGATCTTTCTTTCAGACACTGTCTTTGGTTGTTCAAGAAGAAGGTTATGGATCTCTTTACCGTGGTCTAACAACTCATCTGGTGAGACAGATTCCAAACACAGCCATCATGATGGCCACCTATGAATTGGTGGTCTACCTACTCAATGGATAGTATCGCATAGGGCTGCTGTACTACAAAGAGGGAAGACCAAAAGATTACAGTGGACCATGGAATATTGAAGCCAGCCTGATGGACAGAAGAAAAGTAGTTTGGGAACACATAGCTGTGCTTAAGTGGAAGTTTGGTTGTAGGAATTAAAGTAATCATACCACATTACTTGGTCTTTCAGTAATGTGAA

Publications

PMID - Link Title