Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name Gemin2P1
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Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Mus musculus
Coordinates chr1:112078820-112079716  UCSC
Strand +
Parental Sequence NM_025656.5
Parental seq. overlap 815 bp
Parental seq. overlap (%) 51.2%
Genomic Region Intergenic
Retrocopy Summary Gemin2P1, located on chr1:112078820-112079716, is a retrocopy of the parental gene Gemin2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Gemin2
Full Name gem nuclear organelle associated protein 2
Also known as Sip1|gemin-2
Coordinate chr12:59060177-59075256
Strand +
Gene summary This gene encodes one of the proteins found in the survival of motor neuron (SMN) complex, which consists of the SMN protein and several gemin proteins. The SMN complex is localized to a subnuclear compartment called gems (gemini of coiled bodies) and is required for assembly of spliceosomal small nuclear ribonucleoproteins (snRNP) and for pre-mRNA splicing. This protein interacts directly with the SMN protein and it is required for formation of the SMN complex. Disruption of this gene in mouse resulted in impaired snRNP assembly, and motor neuron degeneration. [provided by RefSeq, Sep 2015]

Homology

Species Scientific Name Retrocopy
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Gemin2P1
GGATCGAAGCAGCCCAGTGTCCAGATGTTGTGATAGCCCAGACTGACCcaaataaattgaaaaagaatTAAAGTGTGAACATTTCTCTTTCCGGATGCCAGCCTGCTCCTGAAGGTTATTACCCAACACTTCAGTGGCATCAACAAGTGGCACATTTTTCAACTGTTCGACAGAGTGTGTACAAGCATAGAAATCATTGGAAATCTCAACATTTGGATAGTAATGTGGCAATGCCAAAATCTGAAGATGAAGAAGGCTGGAAAAATTTTTGTCTAGGTGAAAGATTATGTGCTGAAGGAGCTACTGAACCATCTACAGATAAAAGCCCTGGGATTGATTATGTACAAGTTGGTTTTCTTCCCTGGCTTAGTATTTTAAGCAGAATGAATCAGGCAACCATTACTAATATCTTGGAATATCTAAGTAATTAATTGGAGAAAGAGACTTTACTCCATAATTGGGAGGATGATTTTATGCTTTGTTGGCCTGTCTTGAAAAGCCTTTATTACCTGAGGTATATTGACTAATTCGACAGCTTACAAGATGTTCTGAAGTGAGGCTCCTGGTGGGCAGTAAAGAAGACCAAAGAGTCTAGGCTTTGAATCTGCTGATCTGCTTAGTTAGCAGGTATTTTGATCAACATGATTtagctgatgagccatcttgATAGAGTTTACCTCCTAGGGATGGAAGATCATTCTGTGGAAGGAGCCTAAGTCTGAGGAAGCACAGTTCCAACCTGAGGACAGATTCAACATTTCTTCAAGTTATGTCAAGGTTTCATCTTAATCTGCAGCACAAATTGATATTCAAAACATAGACTTGATTAGTTTAAGTGTCTGAAATGTCTGTAGGAAAGCCAACCTGGTATCTGATGGGCAGTTGGAACAATTTTCT
>NM_025656.5
GTAGCCGGTGGCCTCGGCGGAGGTCGCTTAGGCGCCTGCGCCGTGCCTACTCTGGGCGCCGATTGAGACTGGCGGGAGCGAGAACCATGGCGTGGGTTCCAGCCGAGTCTGCGGTGGAAGAGTTGATGCCACGGTTGTTACCTGTGGAGCCCTGTGACTTGACGGAAGGTTTCGATCCCTCGGTCCCCCCCAGGACGCCTCAGGAATATCTGAGGAGAGTGCAGATCGAAGCAGCCCAATGTCCAGATGTTGTGGTAGCCCAGATTGACCCAAAGAAGTTGAAAAGGAAGCAAAGTGTGaacatttctCTTTCCGGATGCCAGCCTGCGCCTGAAGGTTACTCTCCAACACTTCAGTGGCAACAACAACAAGTGGCACATTTTTCAACTGTTCGACAGagTGTACACAAGCATAGAAATCACTGGAAATCACAACAGTTGGACAGTAATGTGGCAATGCCAAAATCTGAAGATGAagaaggctggaaaaaattttgTCTGGGTGAAAGGTTATGTGCTGAAGGGGCCACTGGACCGTCTACAGAGGAAAGCCCTGGGATCGATTATGTACAAgttggTTTTCCTCCTTTGCTTAGTATTGTAAGCAGAATGAATCAGACAACCATTACTAGTGTCTTGGAATATCTAAGTAATTGGTTTGGAGAAAGAGACTTTACTCCAGAATTGGGAAGATGGTTTTATGCTTTGTTGGCTTGTCTTGAAAAGCCTTTATTACCTGAGGCTCATTCACTAATCCGACAGCTTGCAAGAAGATGTTCTGAAGTGAGGCTGCTGGTGgGCAGTAAAGATGACGAAAGAGTCCCAGCTTTGAATCTGCTGATCTGCTTAGTTAGCAGGTATTTTGATCAACGCGATTtagctgatgagccatcttgatgGCGCTTACCTCCTAGGGATGGAAGATGATTCTGTGGAAGGAGCCTAAGTCTGAGAAACACAGTTCCAACCTGAGGACAGATTACATCACTTCTTCAAGTTATGTGAAGGGCTTCATCTTAATCTGCAGCTCAAGCTGATATTCAAAATATAGATTTGATTGGTTTAAAGTGTCTGAAATGTCTGTGAAAAAGCCCATTTGGTATCTGATGAGCAATTGGaacagttttctctttttttggggggtggggggtggtggatatggagacagggtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctcccgagtgctgggattaaaggagtgcgacACCACCGCCGGGCTGGAAGTTTTCTTAAGTTGCATGCATTGAAAAGAGGTCAAGTGTGACTTACTACTTAAGCAGCTTGTATAAAAACTGATGGCATTTTATACAGGCCCCTGGGGCTgcttcattgggttttttttacaagtatacatatatatttatgttgaAATGTATTTTGTCTATGGAAATTTTTTTGACTcttgaacaaaataaaagacactGGATGTCTTTAGAGTTGAAGTTCATACAGATGAAATGGCAAATCTGTTCATAGTCGACAAGACTAATCCAGTGTTCATGTTTAAACTCAA

Publications

PMID - Link Title
No publications available for this retrocopy