Retrocopy Name | SnrpnP1 |
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Species | Mus musculus | |
Coordinates | chr10:90585744-90586930 UCSC | |
Strand | - | |
Parental Sequence | NM_001349690.1 | |
Parental seq. overlap | 1023 bp | |
Parental seq. overlap (%) | 36.3% | |
Genomic Region |
Intragenic (Anks1b) |
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Retrocopy Summary | SnrpnP1, located on chr10:90585744-90586930, is a retrocopy of the parental gene Snrpn. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | Snrpn |
Full Name | small nuclear ribonucleoprotein N |
Also known as | 2410045I01Rik|HCERN3|Peg4|SMN|sm-D|snRNP-N |
Coordinate | chr7:59632243-60099925 |
Strand | - |
Gene summary | This locus represents a paternally-expressed imprinted gene that encodes a component of the small nuclear ribonucleoprotein complex, which functions in pre-mRNA processing. Genomic and genetic changes in this region result in growth defects and lethality; the corresponding region in human is the critical region for Prader-Willi Syndrome. Alternative promoter use and alternative splicing result in a multitude of transcript variants encoding the same protein. Transcript variants may be bicistronic and also encode the SNRPN upstream reading frame protein (Snurf) from an upstream open reading frame. In addition, long spliced transcripts for small nucleolar RNA host gene 14 (Snhg14) may originate from the promoters at this locus and incorporate exons shared with this gene. [provided by RefSeq, Mar 2017] |
Species | Scientific Name | Retrocopy | |
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Rat | Rattus norvegicus | SnrpnP1 |
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Human | Homo sapiens | Without Homology |
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Chimpanzee | Pan troglodytes | Without Homology |
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Bonobo | Pan paniscus | Without Homology |
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Gorilla | Gorilla gorilla | Without Homology |
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Orangutan | Pongo abelii | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>SnrpnP1 |
GGGATTGCTTACACCTGAGAAGAACTACTGAGTAGCACGTGCCAGAGGTTGAAGTCCAGTTCAAATGTTGAAGGACGGCCTCACTGAGCCAAGAGCATCACTTGTACCCACGGTGTTCTCAGCAACAGCAAGTTCCTGCAGTGGATTTCCAGGCAAAACCAAGACAGGCACTCTTGGCTGAGACACCAAGAGGTGGTTAAAGCAATATTAGAACACCAAGGTGGTAAACCGCTAGGAAAGCAGAGCCATCACTGTGAGACTCTGGTCAAGCTTACACTGTGTGCGAATAGCCTGCATTGGACCCTTATTTATAGCCCTCCCCCCAAGTATTAAGGGTCTTGAGATTTTACCGTTGAGAACAGCTATGGTGGAACAGCAGTCATGACTATGGGACACAGCAGCAAGATGCTGCGGCCCATTGACTATACAATGAGATGAGATGTATCCTGTAAGATGGAAGAATCTTCAATGGCACCTTTAAGGCTTTTGACAAGCATATGTATTTGATCCTCTGTCAAAGAATGCAAAACAGCTAGAATGTGAAGAAAAAAACGGGTTTGGGGTCTGGTCTTGTTATGTGGGGAGAACTTGGTTTCTCTGATTGTGGAGAGTTCACCTCCTAAAGATGCTGGCATTACTCATGTGCCACTTGCTGGTGTTGCAGGCGGCCCTGGGGTTGGAAGGGCAGCTGGCAGAGGAGTGCCAGCTGATGTACCTACTCCCCAAGCTCCTGCTGGATTAGCAGGCCCTGTCTGAGGAACTGGAGGCTCATCCCAGTGGGTCATGACTCCACAGGGAGGAGGAGGCACGGTAGCAATAGCTGCTGCTCTTGCTACTGCTAACATTGCCAGAGCCCCAACTCAGTACTCACCAGGACTTGGAACTCCACCTTCACTTAAAGGAAGAGCAACCCCACCTCTAGGTATTATGGCTCCTCCACCTGCTATGAGACCACCCATGGACCCACAAATTGGCCTTCCCCTGCTGGATACCAATAGGCACCCCCTCTCCAGGAATGAGATGCTCTCACCAGGAATTAGAGGCCCACCTCCCCCAGGAATGCATCTATCAAGACCCTAAGATACACTTGATAAATATTAGACCTTCTTTGTCCCTGCAATGCATCTTGTGAAACTGTGTAGCCTGTAAGCTTTTTGACCCCTCTTACATCATTAACTATAGATAAG |
>NM_001349690.1 |
AGTCAAGTCAGTGCAGCAGGTCCTGCTCAGAGAAGAGGCAGCCAAAGATGCCTGTCACATCCACCCTAGGAAAGGACAGGAAGGCAATACAGCAAACAAGGGAATTAATCCTGAATGCTCATGAGTAGCACCTAAAGAGCAACCACATGAACTTGGAAGGGGACACTTTCTGCTGATTCCTGAGTTCTGATTTCACCCTCAGACCTGATCTACATCTGCTTGTTTGACTAGAAGACTATAGGAgcagtcctctgagaggcacaacaagcagctgaccaaGACAGAAGCAGAAACTTTCACTCAtccaatggagagaagcttgttaaccctgtggttgaattagtgaAAGGCTGGAGAATTTGTGGAGGAAGGTGATTTCACTGAAAAACTTgtaatctcaactaacctggacacctgCAATCTCTCAGATTCTGAACCACCATCCAAGCAGCATGCACTAGCAgacaggagcagtcctctgagaggcacATCAAGCAGATGACCAAGACTGAAGCAGAAACTTTCACTCATCCAATGGACAAAAGCTGgggaaccctgtggttgaattggtgCAAGGCTGGAAGAATTTGTGGAGGAAGGTGATTTCACTGAAAAACCTGCaatctcaacaaacctggacccctgCAATCTCTCAGATTCTGAACCACTATCCAAGCAGCATGCACTAGCAgGAGACAGTGATGGCATTAGGACCTTAATAGGATCTGCCTGCAGTAGCTGAGTACCGTGAAACCATCTCCAACTTGCTCCACGGCCGACAGGCCAAGCAGAAGCACCCTGAGCCAGTCCCAGGCTTTGACAGCTGCTGAAGCCCAGAAGCTGTGATTGGACTGGGGAGACTCTCACTGCCTATAATCTGCTGTGATTCCCTCTTGGAAGATAACCCACTGCATTGGACAATATTCCTGTAGATCAATGTTAAGggatCGCTTACACTTGAGAAGAACTACTGAACAGCACGTGCCCGAGGTCGAGGTCCAGGTCAAACGTCGAAGGACAGCCTCACTGAGCAACCAAGAGTGTCACTTGTACCCACGACGTTCTCAGCAACAGCAAGTTCCTGTGGTGGATTTCCAGGCAgaactaagacaggcattcttAGCTGAGACACCAAGAGGTGGTTAAAGCAGTATTGCAACTTCAAGGTGGTGGAATTCAAGGAAAACAGGACCCATCCTCTGTCTGTGAAACTTTGGTCAAGCTTACATTGTTTGTTAATAGCCTGCATCGAACCTTTATTTATATCCCTTCCCCGAGTATTAAGGATCTTGAAATTTTAGTGTTGACAACGGCTATTGTGGAACAGCAATCATGACTGTGGGTAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGGATGAGATGTATCCTGCAAGATGGGAGAATCTTCATTGGCACCTTCAAGGCTTTTGACAAGCATATGAATTTGATCCTCTGTGATTGTGATGAGTTCAGGAAGATCAAGCCAAAGAATGCAAAACAGCCAGAACGTGAAGAAAAACGGGTTTTGGGTCTGGTCTTGCTACGTGGGGAGAACTTGGTTTCAATGACTGTGGAGGGCCCACCTCCTAAAGATaCTGGCATTGCTCGTGTGCCTCTTGCTGGCGCTGCAGGTGGCCCTGGGGTTGGAAGAGCAGCTGGCAGAGGAGTGCCAGCAGGTGTACCTATTCCCCAGGCTCCTGCTGGATTAGCAGGCCCTGTCAGAGGAGTTGGAGGCCCATCCCAGCAGGTCATGACCCCACAGGGAAGAGGCACTGTtgcagctgctgctgttgctgctactgCTAGCATTGCAGGAGCCCCAACCCAGTACCCGCCAGGACGGGGAACTCCACCTCCACCTGTAGGCAGAGCAACCCCACCTCCAGGCATTATGGCTCCTCCACCTGGTATGAGACCACCCATGGGCCCACCCATTGGGCTTCCCCCTGCTCGTGGGACACCTATAGGCATGCCTCCTCCAGGAATGAGACCCCCTCCACCAGGAATTAGAGGCCCACCTCCCCCAGGAATGCGCCCACCAAGACCCTAAGATACAGTTGATAAATCTCAGCCCTTCTCTTCCCCTACAATGCTTCTTGTGAAATTGTGTACCTGCAAGCTTTTTGACCCCTCTTACTGCATTAACTATAGATAATAAATACATAGAGCAATTCAATTGGGGTTTTTCTTTGTCTGCTGATTTTGTTAAAGTTAGAGTGAAACCAAATGTGTTTCAGTGGTGAAATTATTGTTAAAGATTACTATATTAAGTTTATATTAACTAAACACAGATATGACATTTGCTCAAGCTAGGTTCTTAGGATCAGATAGTTGAaatattttcctgatttctgACATTCACTTCAAGCATTGGTTCAAAATCTTACAGATAAGGAAAATCAAGATCCATTTGCTAAGATTTACAAGCCATTCCGGTTCAATTAAATATGTTTCACTTAAAGGTGTGTGAAGATATTTAAGCAGATATTTAAATTCACATCATTTATGGCACTGGTATGTCATTATTGCTTATGAATTAAAACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAGTCTATAATTATGTTTACAACTATACATacatccatatacacacatacacatgcattccatgcatgcatgcgcacacacacacacacacacacacacagacatctatCATGTACTGGGTctattttggttttagtttgtaCATTTGTTTAGGTGCATTAATTggtattaaataaattataaaatgattttCCTGAAGAAGA |
PMID - Link | Title |
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