RCPedia: Rtcs

Summary

Retrocopy Name	Srsf3P11	Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species	Mus musculus
Coordinates	chr17:4842503-4843322 UCSC
Strand	-
Parental Sequence	NM_013663.5
Parental seq. overlap	701 bp
Parental seq. overlap (%)	27.1%
Genomic Region	Intergenic
Retrocopy Summary	Srsf3P11, located on chr17:4842503-4843322, is a retrocopy of the parental gene Srsf3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	Srsf3
Full Name	serine and arginine-rich splicing factor 3
Also known as	Sfrs3\|X16
Coordinate	chr17:29251634-29262346
Strand	+
Gene summary	The protein encoded by this gene is a member of the serine/arginine (SR)-rich family of pre-mRNA splicing factors, which constitute part of the spliceosome. Each of these factors contains an RNA recognition motif (RRM) for binding RNA and an RS domain for binding other proteins. The RS domain is rich in serine and arginine residues and facilitates interaction between different SR splicing factors. In addition to being critical for mRNA splicing, the SR proteins have also been shown to be involved in mRNA export from the nucleus and in translation. Two transcript variants, one protein-coding and the other not protein-coding, have been found for this gene. [provided by RefSeq, Sep 2010]

Homology

Species	Scientific Name	Retrocopy
Human	Homo sapiens	Without Homology
Chimpanzee	Pan troglodytes	Without Homology
Bonobo	Pan paniscus	Without Homology
Gorilla	Gorilla gorilla	Without Homology
Orangutan	Pongo abelii	Without Homology
Gibbon	Nomascus leucogenys	Without Homology
Green monkey	Chlorocebus sabaeus	Without Homology
Crab-eating macaque	Macaca fascicularis	Without Homology
Rhesus	Macaca mulatta	Without Homology
Baboon	Papio anubis	Without Homology
Golden snub-nosed monkey	Rhinopithecus roxellana	Without Homology
Marmoset	Callithrix jacchus	Without Homology
Mouse lemur	Microcebus murinus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Pig	Sus scrofa	Without Homology
Cow	Bos taurus	Without Homology
Sheep	Ovis aries	Without Homology
Dolphin	Tursiops truncatus	Without Homology
Horse	Equus caballus	Without Homology
Dog	Canis familiaris	Without Homology
Panda	Ailuropoda melanoleuca	Without Homology
Cat	Felis catus	Without Homology
Pale spear-nosed bat	Phyllostomus discolor	Without Homology
Velvety free-tailed bat	Molossus molossus	Without Homology
Greater mouse-eared bat	Myotis myotis	Without Homology
Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
Greater horseshoe bat	Rhinolophus ferrumequinum	Without Homology
Egyptian rousette	Rousettus aegyptiacus	Without Homology
Sloth	Choloepus didactylus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>Srsf3P11
ATCTGTGGGAGCAGAGCCAGAGGGGAGGGCTGGGACTGTTGAAATGTTAGAATTTAAGCTTTGGTCCTTTGAAAACAGGATCTTGAAACATCTTGATTCCTGTCCATTGGTCTGTAAGGTTTATGTAGGTAAACTTGGAAACAATGAAATCTAGACTGATTTAGAACGTGCCTTGGCTGCTATGGACTCACTCTGATGTGTGGCTTTGCTTGTGTTGAATTTGAGGATCCTGGAGTTGCTGCTGATGCTGTCTGTGAGCTAGATGGAAGAACACCATGTGGCTGCCGTGTAAGTGGACCTGTCTAATGGCGAATAAGATGTGGAAATCGTAGCCCTCCTCCCTCTTAGGGTTGTCGTCCTCGAGATGACTACTGCAGGAGGAGTCCTCCACCTCAGCACAGATCTTGAAGCAGAAGCTTCTCCTGAAGCTGGAGCCAGTCACTGtctagagaaaggagaagggaaaggtcTCTGTCTCGTGAGAGACATCTCAGGCTGTCTAGATGGATCCTTCTCTAGGTCTCATAGCACCCATACAGGAGGGTGTGCAGGAAATTAAAGGTTTGTGTGAGACATCATAAGcttgcttcattttaaaaatgctttagcTGTTCAGATTTGTTTTGTCTCTCAGAACCGTGACACACAGAACATGCAATTCTCTATGGTTTCAAATGGATCACACGAGGCACGTGATATCAAGAATTGTTAACTTTACAGTGTTCTTTTAAGCAAGATTGAATTGGCTTTGAACTTTAGTTTTTCATACACCGAAATAAACCTAGATCCTGCGCAGTTGAGGTGTGATGTCCTAATGATC

>NM_013663.5
ACGGTGGTGGTCCGCCATTTCGTGACGCCGCGAGACCGAGAATCTGTAGGAGCAGAACCAGAGGGAAGCGGGTGGGCCTGTCGGAGCGTTAGGATTTGAGCTTGGGCCTTTTGAACCCAGGATCTCGaAATGCATCGTGATTCCTGTCCCTTGGATTGTAAGGTTTATGTAGGTAATCTTGGAAATAATGGAAACAAGACTGAATTAGAACGGGCTTTTGGCTATTATGGACCACTCAGAAGTGTGTGGGTTGCTCGAAACCCTCCTGGCTTTGCTTTCGTCGAATTTGAGGATCCCCGAGATGCTGCTGATGCTGTCCGGGAACTAGATGGAAGAACACTGTGTGGCTGCCGTGTAAGAGTGGAACTGTCGAATGGTGAAAAGAGAAGTCGGAATCGTGGGCCGCCTCCCTCTTGGGGTCGTCGTCCTCGAGATGATTACCGCAGGAGGAGTCCTCCACCTCGGCGCAGATCCCCAAGAAGGAGAAGCTTTTCCCGAAGCCGGAGCAGGTCACTTTCTAGAGATAGGAGAAGAGAAAGGTCTCTGTCTCGTGAGAGAAATCACAAGCCGTCTCGATCCTTCTCTAGGTCTCGTAGccgatctaggtcaaatgaaaggAAATAGAAGACCAGTTTGCAAAAGTGGTGTACAGGAAATAACTTCATCTGACAGGAGTATGTACAGGAAATTAAAGTTTTGTTTGAGACTTCATAAGCTTGGTGCATTTTTAAGATGGTTTAgctgtttaaatttgttttgtctcTTGGAACAGTGACACACAAAACAATGTAATTCTCTATGGTTTTCAGATGGATCATAAGAGGCACGTGATATCAAGAATTGTTACTTTACAATGTTCCCTTAAGCaagatttaattttctttgaattttagtTTTTCATAGACTGAAATAAACCTTAGGTCCTGCCCAGTTTTAAGTGTGATGTACTAATGATATAAAGCAACTGGCGGAAATTGAAAGAAGCTATAGTCCTCTAGTAGCTGAGACACTGTGGCACTGTGGGTGGAATGATAAAGCGGTGTTTAAGAGCTGCTGTGAACACAAGCCAACAGATAAGGGTAGGAACCACACTGAAGATTTGCAAAGGGGTTCCTTCCTGGTTTCTCTATGGGGATGCAGAGCTATTGTAACGTCTTTATTTGGAAATGTAAAACTCAGATGCCAGTGTCCTTTCAGTTTAAGGGTACATTGTAGAGCTCAACTTTTCAGTTACTGTGCAAGATTGTTTTTCATGCTGTCATTTGTAATATGTTTGTGAGAATCTTTGGGATTAAAGTTTTGGTTACAAATTGTTGTTTAACTTGAAAGCCTGTTTTTCCTTGCACACTCAAAATCTGTGAGCTTGGTATCAAGTCCAGGTAAAACATTCCTATTGGAAGCCATACTTATATTTTCTTGTAAAGTGCTTTTGAATTAATAAAGTACTAGCATAATTGTGTAGTAGTCAGTCGAGCGAACCACTGTTGCCATTGTTCTTATCCCTGGGAAAGTAGTTGGTTACCCAGTTCATTCTTTGTAAGAAACACAACTGAGAAGCACTACATTagtgaaggaatttttttttcccctttgcttgTCACTTATGAGAGTTAGCCATTTTTTAGGTGTTGAAGCCAGTTCAGGATTATGGCTGTTAGTGACTAACATTTTAAAGTAAGCTCCAGTATGGTAGGTATATTGTAATTCCCTTAAGTTGCCCATAAAAAGTGGCTTTGATCTTCAGCATGAAaacattcaaaattttaaaatttattttataacttgAGGTGTTGCATGGGATTCCAAATTGATCCATCATGATGTAAAATCCCCAATATGGTTAATTGTAATGATGCACAGTTGAAATGGAGGCATGCATATCCTTTCTCTTAGAATCTGGAGGAGTTGTGGTTTCAGGTATTTGTGTGCAACTAGATTAAATCATAATGCAACAGTCTTGTGGCTTAAGTTTCCTtaaatgtgttcttttgagaTAAGATTCTACTGTACTGACTTGGTCTATGTAAGAGCCATTGCACTAAGTTAAATCTGTAAGCTTATAAATCTCCCCCATTGTTATCTTTAAACAATAAATTTCAGTAAAAAAGGAGAGAGTTGTGTCTAGAAGGTTCCAACATGAGCCTTTGAAAGAAGTAcccatcttctttgaaggtactTTTAAATTAGCTACCCTTGATCATTCTGAGTATAATACTAAAAGGATGATTCCAGGTGTTTGCTAGAGGTCATTATTAGTACTTAATGATGATTAAGAAAGGCACCTGAGAATATGGGTAACCTCAGATATTACATACACAATGTAGGTTCTCTTCATTTACCATCTAGGTGCCTAAGTGTCATGATGGCATCTCTACCCTGTATTGGACTGTAATAAACAGCCATAGTTGTCTTAGCCACTGGCTTAGTGCCTTGTCTTAACTGTGCTTTGCTTTTCTGAATCCAGATGAGATTTAGGTATCAATCTATTCCAGTGTATATTTTTGTACTACCAGACTCTtgtcttctggttttcttttagGGTAGGAACATAAAAGATTATTATTAAAAGACACTGACTTAAAGTT

>NM_013663.5 

ACGGTGGTGGTCCGCCATTTCGTGACGCCGCGAGACCGAGAATCTGTAGGAGCAGAACCAGAGGGAAGCGGGTGGGCCTGTCGGAGCGTTAGGATTTGAGCTTGGGCCTTTTGAACCCAGGATCTCGaAATGCATCGTGATTCCTGTCCCTTGGATTGTAAGGTTTATGTAGGTAATCTTGGAAATAATGGAAACAAGACTGAATTAGAACGGGCTTTTGGCTATTATGGACCACTCAGAAGTGTGTGGGTTGCTCGAAACCCTCCTGGCTTTGCTTTCGTCGAATTTGAGGATCCCCGAGATGCTGCTGATGCTGTCCGGGAACTAGATGGAAGAACACTGTGTGGCTGCCGTGTAAGAGTGGAACTGTCGAATGGTGAAAAGAGAAGTCGGAATCGTGGGCCGCCTCCCTCTTGGGGTCGTCGTCCTCGAGATGATTACCGCAGGAGGAGTCCTCCACCTCGGCGCAGATCCCCAAGAAGGAGAAGCTTTTCCCGAAGCCGGAGCAGGTCACTTTCTAGAGATAGGAGAAGAGAAAGGTCTCTGTCTCGTGAGAGAAATCACAAGCCGTCTCGATCCTTCTCTAGGTCTCGTAGccgatctaggtcaaatgaaaggAAATAGAAGACCAGTTTGCAAAAGTGGTGTACAGGAAATAACTTCATCTGACAGGAGTATGTACAGGAAATTAAAGTTTTGTTTGAGACTTCATAAGCTTGGTGCATTTTTAAGATGGTTTAgctgtttaaatttgttttgtctcTTGGAACAGTGACACACAAAACAATGTAATTCTCTATGGTTTTCAGATGGATCATAAGAGGCACGTGATATCAAGAATTGTTACTTTACAATGTTCCCTTAAGCaagatttaattttctttgaattttagtTTTTCATAGACTGAAATAAACCTTAGGTCCTGCCCAGTTTTAAGTGTGATGTACTAATGATATAAAGCAACTGGCGGAAATTGAAAGAAGCTATAGTCCTCTAGTAGCTGAGACACTGTGGCACTGTGGGTGGAATGATAAAGCGGTGTTTAAGAGCTGCTGTGAACACAAGCCAACAGATAAGGGTAGGAACCACACTGAAGATTTGCAAAGGGGTTCCTTCCTGGTTTCTCTATGGGGATGCAGAGCTATTGTAACGTCTTTATTTGGAAATGTAAAACTCAGATGCCAGTGTCCTTTCAGTTTAAGGGTACATTGTAGAGCTCAACTTTTCAGTTACTGTGCAAGATTGTTTTTCATGCTGTCATTTGTAATATGTTTGTGAGAATCTTTGGGATTAAAGTTTTGGTTACAAATTGTTGTTTAACTTGAAAGCCTGTTTTTCCTTGCACACTCAAAATCTGTGAGCTTGGTATCAAGTCCAGGTAAAACATTCCTATTGGAAGCCATACTTATATTTTCTTGTAAAGTGCTTTTGAATTAATAAAGTACTAGCATAATTGTGTAGTAGTCAGTCGAGCGAACCACTGTTGCCATTGTTCTTATCCCTGGGAAAGTAGTTGGTTACCCAGTTCATTCTTTGTAAGAAACACAACTGAGAAGCACTACATTagtgaaggaatttttttttcccctttgcttgTCACTTATGAGAGTTAGCCATTTTTTAGGTGTTGAAGCCAGTTCAGGATTATGGCTGTTAGTGACTAACATTTTAAAGTAAGCTCCAGTATGGTAGGTATATTGTAATTCCCTTAAGTTGCCCATAAAAAGTGGCTTTGATCTTCAGCATGAAaacattcaaaattttaaaatttattttataacttgAGGTGTTGCATGGGATTCCAAATTGATCCATCATGATGTAAAATCCCCAATATGGTTAATTGTAATGATGCACAGTTGAAATGGAGGCATGCATATCCTTTCTCTTAGAATCTGGAGGAGTTGTGGTTTCAGGTATTTGTGTGCAACTAGATTAAATCATAATGCAACAGTCTTGTGGCTTAAGTTTCCTtaaatgtgttcttttgagaTAAGATTCTACTGTACTGACTTGGTCTATGTAAGAGCCATTGCACTAAGTTAAATCTGTAAGCTTATAAATCTCCCCCATTGTTATCTTTAAACAATAAATTTCAGTAAAAAAGGAGAGAGTTGTGTCTAGAAGGTTCCAACATGAGCCTTTGAAAGAAGTAcccatcttctttgaaggtactTTTAAATTAGCTACCCTTGATCATTCTGAGTATAATACTAAAAGGATGATTCCAGGTGTTTGCTAGAGGTCATTATTAGTACTTAATGATGATTAAGAAAGGCACCTGAGAATATGGGTAACCTCAGATATTACATACACAATGTAGGTTCTCTTCATTTACCATCTAGGTGCCTAAGTGTCATGATGGCATCTCTACCCTGTATTGGACTGTAATAAACAGCCATAGTTGTCTTAGCCACTGGCTTAGTGCCTTGTCTTAACTGTGCTTTGCTTTTCTGAATCCAGATGAGATTTAGGTATCAATCTATTCCAGTGTATATTTTTGTACTACCAGACTCTtgtcttctggttttcttttagGGTAGGAACATAAAAGATTATTATTAAAAGACACTGACTTAAAGTT

Publications

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