Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name Epb41l4bP1
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Mus musculus
Coordinates chr17:54309368-54311745  UCSC
Strand +
Parental Sequence NM_019427.2
Parental seq. overlap 2083 bp
Parental seq. overlap (%) 69.3%
Genomic Region Intergenic
Retrocopy Summary Epb41l4bP1, located on chr17:54309368-54311745, is a retrocopy of the parental gene Epb41l4b. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Epb41l4b
Full Name erythrocyte membrane protein band 4.1 like 4b
Also known as 6430543G08Rik|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2
Coordinate chr4:56991972-57143739
Strand -
Gene summary Predicted to enable cytoskeletal protein binding activity. Predicted to be involved in several processes, including actomyosin structure organization; positive regulation of keratinocyte migration; and wound healing. Predicted to be located in apical part of cell; cytosol; and plasma membrane. Predicted to be active in cytoskeleton. Is expressed in several structures, including cartilage; genitourinary system; gut; nervous system; and skin. Orthologous to human EPB41L4B (erythrocyte membrane protein band 4.1 like 4B). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Epb41l4bP1
gaattGAAGTGCCCCTATGAAATGGTGTGGGACTAGCTGTCCTCTTTCTGCAAGCGGAGCTAGGAGAGTGTGAGCTCCTGGAACACACATCTGAGCTTGTGTCTGAGTTTCGGTTCCTCCCAAATCAGACAGAAGCCATGGAGTTCGATATCTTCAAGAGATGGAAAGAGTACAGGGGAAAGAGCCCTGCCCAGGCAGAACTCTCCCATCTGAACAAAGCGAAGTGGCTGGAAATGTATGGGGTGGACATGCATGTTGTCAGTGGAAGAGATGGCTGTGAATATTCTCTTGGACTGACCCCGACAGGCATATTAATCTTAGAAGGAGCTAACAAAATATGCTTATTCTATTCGCCTAAGATCACCAAAATGGACTTTAAAAAAGAGCAAACTGACCCTCGTAGTAGTGGAAGATGATGACCAGGGGCGTGAGCAAGAGCACACCTTCGTGTTCAGGCTGGACAGTGCGCGTACCTGTAAGTACTTGTGGAAGTGTGCAGTGGAGCACTGTGCCTTCTGTCTGCGCACACCCATCAACAGCAAGTCCTCCAGATCTGACTTCATCCGGCTGGGTTCCCACTTCCGGTTCAGTGGACAGTCGCAATATCAAGCTGCACACGGCTCCAGATTGCGAAGAACCTTTGAGCCTAGCAAACGTTACCCATCCCGGCAACATTCCACATTCAAAGCCAGCAACCCAGTGATTGCTGCTCAGTTCTGCTCTAAAACAAATCTTGAAGTCCATAATTACCAGCCTCAGTACCTTCGTGACGTCCACCCCAGCCAGCCCCGGTGGCGCCCTCACTCTCCAAATGTCAGTAACCATTCCATCTGCAAGTAAAACAAGCCATGTTTTCAGGATGACAGGCCACACTGGAAAGCCTCAGCCAGTGGAGATGGCAGCCACTTTGACTATGTCCAGGACCAGAACCAGAGGAACTTAGGAGAGGCGTACAATGTCACGTACCGGGACAAACTCATGACCGCACTCTGAGAGACTGAAGCCTCCTCCGGTCACCACCATGGTGCCTTTGCATTCCATGAGAAGCGTCATGGCATCACATGAATGTTTTGTACAAGTGTCATTAGTGCTTTTCGTGTCCCTGTAAACATTTGAAGCCACGATTTACTGTGGACTGCCTTCTCAATAATGAAGGTAGCTAAAGGCTCAGGAATCATTTTGATATGCTGAGTTTAAAACTAAAGTCAAAGTCTCAACCATCATGCTGTGTACCTGATAGTTTTGTCATTTAACCAGTGGGGCCacataaagcaaacaaaagcaaacaaaaaccagaagctTGGGGAAATAGCTTAGCACATAATACTGTTGTAGGAGTGGAAATCAACAGGGACCATCACTTCTCATTTGGGGTGAGAGCACGCATTCCAGACTAACTCCCCATAAGGGTGACTATAATACCCCTTCTGTAGCAGAAGCTCAATAAAGATTATAAAATTCATTAGATATTCCATCAATACAGGGAGTTTTGGAATTTTTCATCTGTAAGTGGGTTAGCCCATGTGGAATTGAGACTCAATGCTGATCACCAGTTGCATAGCATGTTTCACTAGAATTTACTTCTCAAACATAAGGATGATTTGTAATGCCTCAGTGACTGGTGCTGCTAACCTGTGTGATTTCAGAAGACACTATTGTGACTGCTGTCAGAGTAGAGGCTGGATTCCATCCTAGCCTTAACTCCTTTGAATAGCAGCATGCAGTTGAGATGAAGTGGGGGCACACAGGAGAGCCTGCCAGGTTTCTGCAGGTCGTGCCAAAGCACTGTGTTGCACAGGGGGGTGCATATGCCCTCCTCCTTCTGTAGGACCCCAAAGCAACATGTCTTTTAGGGTGAAACTTGTACCAAAGTATTTATTTACCCCAATTCAAGTAGCGCCTCTAACCTTGTTATGTCTTTGTAGGCAGTACCAGGATGCTCTTCCATTTGTGTTTCTGTGCAATCAGTTAGTTTTGTGTCACTTTGATACATGTGATTATAATTTGGTTCCTTTTAAGCCCTTTGACATGTGTTAATACCATCTTCTCTTGCTCAAACCTGGCCATTTTGGTTCTATGAAAGTCTCTTGAGGAGGAGGGGATCAGTCTTCTGTACACTTGCACAGAGGAGTAGACCACCTCCCTATAACCTCCCCACAAGATGCATTTTTACAGGGATGTTCCATTTCAGCAGGTGTTCTGATCCCCAGTGTATGTACTGCATCTGAATAAATGTGTTCTGGGTCTcctcat
>NM_019427.2
AGGATGCTGCGGTTCCTGCGCCGGACCTTTGGCCGCCGCTCCATGCAGCGCTACGCGCGGGGCGCGGCGGGGCGCGGGGCCGCCGGGCTGGGGGACGAGCGCGACGGGGGGCCGCGAGGGGGCCCGGCTGCCGCCGCCAGCTCCTCGGTGCTGCCCGCCGCGCCCGGGGGCAGCGTATTCCCGGCCGGCGGCGGGCCCCTGCTCACCGGCGGCGCGGCTGTGCACATCTCCGCCTCGGGAGCTGCCAAGGCCACCCTTTACTGCCGTGTCTTCCTGCTCGACGGAACCGAAGTGAGCGTGGACCTGCCGAAACATGCCAAAGGCCAGGATTTGTTCGACCAGATTGTGTACCACTTGGACCTGGTGGAAACAGATTATTTTGGTCTGCAGTTCCTCGACTCTGCCCAGGTCACGCACTGGCTGGATCACGCGAAACCCATAAAGAAACAGATGAAAGTGGGACCTGCCTATGCCTTGCACTTTCGAGTCAAATACTATTCTTCAGAACCAAACAACCTTCGAGAGGAATTTACAAGGTACCTGTTTGTTTTACAACTCAGGCATGACATTCTTTCTGGAAAATTGAAGTGCCCCTATGAAACGGCCGTGGAACTAGCTGCCCTCTGTCTGCAAGCGGAGCTAGGAGAGTGTGAGCTCCCGGAACACACGCCCGAGCTTGTGTCTGAGTTTCGGTTCATCCCAAATCAGACAGAAGCCATGGAGTTCGATATCTTCCAGAGATGGAAAGAGTACAGGGGAAAGAGCCCTGCCCAGGCGGAACTCTCCTATCTGAACAAAGCGAAGTGGCTGGAAATGTATGGAGTGGACATGCATGTTGTCAGGGGAAGAGATGGCTGTGAATATTCTCTTGGACTGACCCCGACAGGCATATTAATCTTTGAAGGAGCTAACAAAATAGGCTTATTCTTTTGGCCTAAGATCACCAAAATGGACTTTAAAAAGAGTAAACTGACCCTCGTAGTAGTGGAAGATGATGACCAGGGGCGTGAGCAAGAGCACACCTTCGTGTTCAGGCTGGACAGTGCGCGTACCTGCAAGCACTTGTGGAAGTGTGCAGTGGAGCACCATGCCTTCTTCCGTCTGCGCACACCCAGCAACAGCAAGTCCGCCAGATCTGACTTCATCCGGCTGGGTTCCCGCTTCCGGTTCAGTGGACGGACGGAATATCAAGCTACACACGGCTCCAGATTGCGAAGAACCAGCACCTTTGAGAGGAAGCCTAGCAAACGTTACCCGTCCCGGCGACATTCCACATTCAAAGCGAGCAACCCAGTAATTGCTGCTCAGCTCTGCTCTAAAGCAAATCCTGAAGTCCACAATTACCAGCCTCAGTACCATCCTGACGTCCACCCCAGCCAGCCCCGGTGGCGCCCTCACTCTCCAAATGTCAGTAACCATTCCATCTGCAAACAAAACAAGCCATGTTTTCAGGATGACAGGCCACACTGGAAAACCTCAGCCAGTGGAGATGGCAGCCACTTTGACTATGTCCAGGACCAGAACCAGAGGAACTTAGGAGGGGCGTACAGTGTCACGTACCGGGACAAACTCATGACCGCACTTTGAGAGACTGAAGCCTCCTCCGGTCACCACCATGGTGCCTTTGCATTCCATGAGGAGCGTCCTGGCATCGCATGAATGTTTTTGTACAAGTGTCATTAGTGCTTTTCGTGTCCCTGTAAACATTTGAAGATAACAGATAGCCATGATTTACTGTGGAATGCATTCTCAATTATGAAGGTAGCTAAAGGCTCAGGAATCGTTTTGATATGCTGGCTTTAAAACTGAAGTCAAAGTCTCAACCATCATGCTGTGTATCCTGATAGTTTTGTCATTTATCCAGTGGGGCCACATAAAGCAAACCAGCAAGACCAAAGCTTGGGAAAATAGCTTAGCACATAGGACTGTTTGTAGGAGTGGAAATCGACAGGGACCAGCCTCCCTTGCCGTGTGACCTTAGCTAAATCATTCCCCTTTCTTTGATTTCATTTCCTCCCTGAAAAGAACGGGCTGGGCTAAGTGATCTCCAAGGTCTTCTATTCTGTGATCTGTTAAGATTTCACTTCTCATTTGGGGTGAGAGCATGCATCCAGACTAACTCCCCATAAGGACGACTATAATACCCCTTCTGTAGCAGAAGCTCAATAAAGATTACAAAACTCATTAGGTATTCATCAATACAGGGAGGcttggagttttccatctgtaAATGGGTTAGCCCGTGTGGAATTGAGCCTCAGTGCTGATCACCAGTTGCATAGCATGTTTCACTAGAATTTACTTCTCAAACGCAAGGATGCTTTGTAATGTCTCAGTGACTGGTGCTGCTACCCTGTGTGATCAGCGTAGAGGCTGGGTTCCATCCTAGACTTAACTCCTTTGACCAGCAGCATGCAGTTGAGATATAGTGGGGGATCACAGGAGAGCCTGCCGGGTTTCTGCAGGTCGTGCCAAAGCACTGTGTTGCACAGAGGGATGCATATGCCCCCCTCCTTCTGTAGGACCCCAAAGCAACATGTTGTCTTTTAGGGTGGAACTTGTACCAAAGTATTTATTTACCCCGATTCAAGTAGCACCTCTCTAACCTCGTTACGTCTTCGTAGGCAGTCCCAGGGTGCTcttctgtttgtgtttctgtgcaaTCAGTTAATTCTGTGTCACTTTGATATATGTGATTATAATTTGGCTCCTTTTAAGCCCTTTGGGCATGTGTATAACATCTTCTCTTGCTAAAATCTGGCCTTTTTAGTTCTATGAAAGTCTCTTGAGGAGGAGGGGATCAGTCCTCTGCACACTTGCACAAGGGAGTAGACCACCTACCTATAACCTCCCCACAAGATGCATGTTTACAGGCGTGTTCCAGTTCAGCAGGTGTTCTCATCCCCAGTGTATGTACTGCATCCATCTGAATAAACGTGTTCTGGGTCTCTTCATCTTACTGCTAA

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