Retrocopy Name | Iws1P1 |
|
Species | Mus musculus | |
Coordinates | chr18:44954198-44954617 UCSC | |
Strand | + | |
Parental Sequence | NM_173441.3 | |
Parental seq. overlap | 410 bp | |
Parental seq. overlap (%) | 4.3% | |
Genomic Region |
Intergenic |
|
Retrocopy Summary | Iws1P1, located on chr18:44954198-44954617, is a retrocopy of the parental gene Iws1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | Iws1 |
Full Name | IWS1, SUPT6 interacting protein |
Also known as | 1700069O15Rik|3000008H23 |
Coordinate | chr18:32200377-32237384 |
Strand | + |
Gene summary | Predicted to be involved in several processes, including poly(A)+ mRNA export from nucleus; regulation of histone modification; and regulation of mRNA export from nucleus. Predicted to act upstream of or within RNA splicing; mRNA processing; and mRNA transport. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; early conceptus; genitourinary system; immune system; and nervous system. Orthologous to human IWS1 (interacts with SUPT6H, CTD assembly factor 1). [provided by Alliance of Genome Resources, Apr 2022] |
Species | Scientific Name | Retrocopy | |
![]() |
Human | Homo sapiens | Without Homology |
![]() |
Chimpanzee | Pan troglodytes | Without Homology |
![]() |
Bonobo | Pan paniscus | Without Homology |
![]() |
Gorilla | Gorilla gorilla | Without Homology |
![]() |
Orangutan | Pongo abelii | Without Homology |
![]() |
Gibbon | Nomascus leucogenys | Without Homology |
![]() |
Green monkey | Chlorocebus sabaeus | Without Homology |
![]() |
Crab-eating macaque | Macaca fascicularis | Without Homology |
![]() |
Rhesus | Macaca mulatta | Without Homology |
![]() |
Baboon | Papio anubis | Without Homology |
![]() |
Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
![]() |
Marmoset | Callithrix jacchus | Without Homology |
![]() |
Mouse lemur | Microcebus murinus | Without Homology |
![]() |
Rat | Rattus norvegicus | Without Homology |
![]() |
Chinese hamster | Cricetulus griseus | Without Homology |
![]() |
Rabbit | Oryctolagus cuniculus | Without Homology |
![]() |
Pig | Sus scrofa | Without Homology |
![]() |
Cow | Bos taurus | Without Homology |
![]() |
Sheep | Ovis aries | Without Homology |
![]() |
Dolphin | Tursiops truncatus | Without Homology |
![]() |
Horse | Equus caballus | Without Homology |
![]() |
Dog | Canis familiaris | Without Homology |
![]() |
Panda | Ailuropoda melanoleuca | Without Homology |
![]() |
Cat | Felis catus | Without Homology |
![]() |
Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
![]() |
Velvety free-tailed bat | Molossus molossus | Without Homology |
![]() |
Greater mouse-eared bat | Myotis myotis | Without Homology |
![]() |
Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
![]() |
Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
![]() |
Egyptian rousette | Rousettus aegyptiacus | Without Homology |
![]() |
Sloth | Choloepus didactylus | Without Homology |
![]() |
Tasmanian Devil | Sarcophilus harrisii | Without Homology |
![]() |
Opossum | Monodelphis domestica | Without Homology |
![]() |
Platypus | Ornithorhynchus anatinus | Without Homology |
![]() |
Chicken | Gallus gallus | Without Homology |
![]() |
Turkey | Meleagris gallopavo | Without Homology |
![]() |
Zebra Finch | Taeniopygia guttata | Without Homology |
![]() |
Budgerigar | Melopsittacus undulatus | Without Homology |
![]() |
Painted Turtle | Chrysemys picta | Without Homology |
![]() |
Lizard | Anolis Carolinensis | Without Homology |
![]() |
Frog | Xenopus tropicalis | Without Homology |
![]() |
Zebrafish | Danio rerio | Without Homology |
![]() |
Drosophila | Drosophila melanogaster | Without Homology |
>Iws1P1 |
GGGACTATGTTGTCAGGCCCAAGTGGAATGTAGAAATGGAGTCATCCAGGTTTCAGGCATCCTCCAAGAAAGGTATCAGTCGACTGGATAAACAGATGAGAAAGTTCACAGATATCAGGGAAAAAAAGCAGATCTGCACATGCAGTCAAAATCAGCATCGAGGGCAATAAAATGCCATTGTGATCTTGCCTGTGACGTGTCCCCATctctaaaagaaaaaatgcaCAGTGGACTATGGAGAAAGAAGATAATTTTAAATGTCTTAGTGTGTCTCTAAATGGTTCCATTTGTATCATCTGTTGTTGTAGGACTAACATTTCTCTCTGTTGTATTTAAGACCAGTTGTCTGCTTTGTATAGAAGAGTACTTACTACTCCTGCTTCTATCAACTATACATAATACAATTTCATTATGGTTTTG |
>NM_173441.3 |
GCGCATTGCATTTCTCTGAGGGCCGTGGGTAGACGCCATTTTGGCCCCAGAGGTGCTTCTGGGAAGTTGAGCGCGATTCTTGGTTTTGCCGGCCGGTGAGGCACGGCCCTGTGGAGTAGCTGGCGTGAAGCGTCGGCGTCCGCCGCCGCCGACCTCTCCGGAGTCTCGGGCGAGGCAGAAGCGCGCCGCGGCGGAGAGAGGTCACTCGGCCAGGAAGGACGTGACGGGGGCGGCGCGTGGCGCGGACACTCCCCGCCGAGAGCCCGCCTGCCATGGACTCGGAGTACTACAGCGGGGACCAGTCAGatGATGGTGGTGCAACCCCAGTACAGGACGAGCGGGATTCAGGGTCAGATGGTGAGGATGGTGTAACCGAGCAGCACTCCGGATCCGACACTGGAAGTGTAGACCACCACTCAGAGAATGAAACTAGTGATAGAGAAGATGGCTTGGCCAAGATACATAATGGAACAGACTCTGAGAATGATGAACCTTCCAATGCTAATGCCAGTGACTCTGAAAGTGAGGAGCTTCACAGGCCAAAGGACAGTGACTCTGACTCTGAGGAGCATGCAGAGTCTCCTGCTAGTGATTCTGAAAATGAACCTGTCAACCAACATGGGAGCGACTCTGAAAATGAAGAGCTGCTTAATGGGCATGCCAGTGACTCTGAAAAGGAAGAGGTTAGCAAGCATGCCGCCAGTGACTCTGAAGCTGAGGACACTCTGCAGCCTCAGGTCAGCGAGTCTGACAGTGAAGATCCCCCAAGGCCCCAGGCCAGTGACTCAGAAAATGAGGAGCCTCCCAAACCTCGGATAAGTGACTCGGAGAGTGAGGAGCTCCCCAAACCCCGAGTCAGTGACTCAGAAAGTGAGGACCCTCCAAGGCCCCAGGCCAGTGACTCAGAAAGCGAGGAGCTCCCCAAACCCCGAGTCAGCGACTCTGAAAGTGAGGACCCTCCAAGGCCCCAGGCCAGTGACTCAGAAAGCGAGGAGCTCCCCAAACCCCGAGTCAGCGACTCGGAAAGTGAGGACCCTCAGAAAGGACCTGCTAGTGATTCTGAAGCTGAGGATGCCTCCAGACACAAAGAGAAGCCAGACTCAGATGACAGTGAtggggagaataagagggaagaTTCTGAAGTGCAGAATGAGTCAGATGGCCATACAGACAGAAAAGGACTCCACAGCTCTGACAGCGAGGAGGAAGAACCCAAAAGGCAAAAAATTGacagtgatgatgatgaagaaaaggagggggaTGAGGAGAAAGTAGCAAAGCGGAAGGCTGCTGTGCTTTCTGATAGTGAGGATGACGCAGGCAACGCATCAGCAAAGAAGAGTCGAGTTGTCTGTGATGCTGATGACTCTGATAGTGATGTTGTATCGGACAAGTCAGGCAAACGAGAGACAACAGTAGCATCTGACAGTGAAGAAGAAGCCGGGAAAGAAGAGTCTTctgtgaagaagaaggaagacaaggaCCTGTTTGGGAGTGACAGTGAGTCCGGCAATGAAGAAGAaaatctTATTGCAGATATATTTGGAGAATCTggtgatgaagaggaagaggaatttACGGGTTTTAACCAAGAAGAtttggaggaagagaaaaacGAAACACAGCTAAAGGAAGCAGAAGATTCTGATTCTGATGATAACATAAAGAGAGGCAAGCATATGGACTTTCTGTCAGATTTTGAGATGATGTTACAACGAAAAAAAAGCATGTGTGGCAAACGCAGACGAAATCGAGATGGGGGCACTTTTATTAGTGATGCAGATGATGTTGTGAGCGCCATGATTGTCAAGATGAATGAAGCTGCTGAGGAAGACAGACAATTGAATAATCAAAAAAAGCCAGCTCTGAAAAAATTAACCTTATTGCCTACTGTGGTTATGCACCTTAAAAAGCAGGACCTTAAAGAAACATTTATTGACAGTGGTGTGATGTCTGCCATTAAAGAATGGCTCTCACCTCTACCAGATAGGAGTTTGCCTGCACTGAAGATTCGGGAGGAATTGTTAAAGATTCTGCAAGAGCTACCTAGTGTGAGCCAAGAGACCCTGAAGCATAGTGGGATTGGCCGAGCAGTGATGTATCTGTATAAACACCCTAAGGAATCAAGGTCCAACAAGGATATGGCAGGGAAGCTCATCAATGAGTGGTCTCGGCCCATATTTGGTCTTACCTCAAACTATAAAGGAATgacaagagaagaaagggaacagAGAGATCTAGAACAAATGCCACAGCGACGAAGATTGAGCAGCACTGGTGGTCAGACACCACGAAGAGACCTGGAGAAGGTCCTAACAGGAGAAGAAAAgGCTCTTAGACCTGGAGATCCTGGCTTCTGTGCCCGTGCAAGAGTCCCAATGCCATCAAACAAGGACTATGTTGTCAGGCCCAAGTGGAATGTAGAAATGGAGTCATCCAGGTTTCAGGCATCCTCCAAGAAAGGTATCAGTCGACTGGATAAACAGATGAGAAAGTTCACAGATATCAGGAAAAAAAGCAGATCTGCACATGCAGTGAAAATCAGCATCGAGGGCAATAAAATGCCATTGTGATCTTGCCTGGGACGTGTCCCCAtctctaaaagaaagaaatgcacagTGGACTATGGAGAAAGAAGATAATTTTAAATGTCTTAGTGTGTCTCTAAATGGTTCGATTTGTATCATCTGTTGTTGTAGGACTAACATTTCTCTCCGTTGTATTTAAGACCAGTTGTCTGCTTTGTACAGAAGAGTACTTACTACTCCTGCTTCTATCAACTGTACGTAATAAAATTTCATTATGGTTTTGGGGGGTTGTCTCATCATTGTCTTAGACACTATTCTCTGTGAGATCAAAAGCCAGTCCGTTTCAGTGTGTAAGTATGATATGAGGAATTTGTCTGGCCTTTGTTCCTGGCTCCTGACAAGGAATATCTCAAACCTTTACAATTCTTGAACTATCTTTGTTATACTCTTGATTTGGCACATCGTAGGGCCCTAAGTTCGCTCTAAGACTGGTCAGCAGAAATATGCTTGACCTAGTCGTATTGCCTGTTTGATTAACCAGCCATACCTTTGTATTGAAGCTATAGTAAAGAAAAGAACTCTGGACAAGTCAGGTGCcttgcacacctataatcccagcattttggagactgATGTTGAAATAAGagggtcatgagtttgaggctagcctggattacATGGCAAGACTCTTAACTGCTCTGGATACTGCAACTATGTTGATGTGCAAAGAGAACAAAGGCACAGAAGCTCTGCACCACCCTCCATACTACTCCTGAATCTTCATTGACCTGGTTGGCTTAATTTGTATCTTTTCTAATAAGATCAGTTATAAGTATAACCTTTTATTGAAAGACATAGTGCTTTTCCAAGTTCTATGAGTCATTCAGCAGGTTTTTAAACCAAGAAATTCTTGGGAACTTGCCTGGAAGTTTATAGCTACCCTGGAATTTTCATGGTCTAAAGATATCACTTGCAGTCTATGTCTGAAGTTGGGACAGTCTTGTGGAGGAAATCTGATCCCTAGAACTGTCAATTCTTACACTAACACCGAGCATTTGGTATCAGAATTGTGTTGTATACCACTgtatatgcctataatctcagcactttggaggcagaggcaggaatttTGGGAGCTCTTCCAACAATAACTTTGAGTTACTCAAAGACTGTTCAAATAAAGATGGTATCTCAGTAGAGTTGGAAATACAACAAGCatactttttatttctcttgttagagatgctttgtttgtttaaatctgaAGAGTTAAGCTGTGGGGAGAAAAAGTTAAGAAAATACAGATATAATTGAAAATTAGTTACATATAGCAATTGGACAAATAGAAAAAGGAGAAACTATTTATAGTTTCTTACTTGGTTTTGAGAATTCTTAATCATGAGAGATTTCTATAGATCAAGAAAGTTTTATCAGTAACTCATTCATTACTTAAGTCCTCTTCTAGTACAAACTGGagccttgatttaaaaaaatagattattaTTGGCCACAATGGCCTTTGGACAATTGAAGGAATGTGGACTTCATGGACTAGAACACTCCATAAGAACCTCTCAAGcctggtgtggtgacacacacctttaatctcagcatttgggagggagaagaaggctgACCTCTGAGTTCatgaccagcctggcctacagagtgagttccaggacagccagggctacacagagaaaccctgtcttttaaaaagagagagagaaaaaagaaaagagcctcATAAAGCCTCATTAAAGTACACTCAGCATGCAAGAGCAAATGGAGTGTGAAGCAGAAACCTACAGAGCCAACAGTTACAGACTAGGTGGTGGCAAAAACTACCTCTGGCTTTGTTTAATTTCATTaactaaaaacaataaaagcatCTAATGAATTCAAAACAGTTCTGACATGTAAAGCAagtttttaagagttattttggTGTCTTGGGATGAGCTTCACGTAACACCATGTTAATGGGAGTAAATATAACCAGCAGGTGATAAGCCCTTGATTGAAGGAGATGGTTCTGCACTACTTGAAGGGAAAGATGctaatttctttataaattaccttTGCTGtgtggattggggggggggggtccccaagCTTGACCCATTCATTGCCTTCATAGTTTCCATTTACTATAGTTTCTAGAACACTAAAATTAGCTCCCATTTACCCTTCAATATTTTTCAGTGTGCCACATTTTATATTCTATATCCAAGATTTCTTTTGCAGAGCATGTGAGTATAGTTTATCAAGAACCTTTGTTCTCAAGCTCCATATCTAAGCATATTTCTCTTAAAAACATGTTTTGTGGCGGggcagtgcacatctttaatgcctgcattcgggaagcagaggcaggtggatctcttgagtttgaggccatcctgctTTGATTGCATTTTAGGTcagcaagagctacacagagaaaccctgtctgagaaTAGAAACAACCCATGGTTTTTAGGGGCTAGATCATACAGctctgttggtagagtgcttgcctagcacgcactaagtctgggttccatccccagtaccacaaaTATCTGGCCTGTCACCTTGCCAACCTGGCCTGGCTACATGGCAAgaacaaagccagcctgggctacttgacaGTTCGTCTCAAGATTGGCCACATTAACTTTGACCTCTTGTATGGAATGCTGGGTAGTCActttttggtttgggttgttttttggtttgtttgtaaaATGCTTTAATTTTGGCAAAAGATTTGTATCTTTACCACTTTTAACCATACAGCTTAGGTGCATTGACTGGGTTCACAGTGGTATGAGCCACCTTCATCTTACAAACTTTAGCTGTACTGGGCACAGTAGTGcacgtttttaatcccagcactaagcaGACAGAAGCAGGACAATttcagagttcaaagtcatcctagtctttatagagagttccagaccagttaAGACTTGCatagatcctgcctcaaacaacaaACACCTTAGCTCCTTCCACCAGCTCTTGACAAGTTCATTCTGCTTTCTGCCTCTGATTTAGACTATTCTAGGAACCTAGAATTTAAtttatggggggaggggaaccATGGTATGCATATGGAAAATCACAATTTTATGGAGTTCTTGCCTTCGACCTTTATTTACTTGGATTCTAAGGATGAGACAGGTTGCAAGACTTTAGTGGCAAGGATTTTGACCAtttgagctatctcaccagcctgtTTCTATGTATAGGTGATAATGCTTTGCCTTGTGCTTTTTTAAGTGACTTTTGTAACTTTGGCCCTACTGTTAAGTCTGATccatttgagataattttatgttGTAGaaagtttacttttatttctgtACATCTTTGTTGAAAGACTGACCCTTACTGCTCTTGGATCCCTTATCAAAACGTATCTGACAGTATGAGGGTTTTCTTGTATATTTTGCTCCAGActtttagttcattttgttttgttttatcctcaTTATCCTGTTTTTACTTCAGGAACTTTATAGTAAAATTTGAAGTCAAGTAATATGATTTATTCACTCCAGTATTGTTTTGGTTGTTGGGATTCCTTGAAATGAAGGGGAaagtgtgtatgaatatgtacgTGCCTGCCCCACAGCTGCATGTGGacgtcagaagacaactttcaggaatagGTTCTTCTTCCCCCTGAGTTATGTGGCTTGCACTGCCCACACTTTTACCTGAAGAGCCATCCTTCTGGGCCCCTCCACTTTTCCATTCGATATGTTTGGACTCTGGGCTTCTTTGAGGTTTTGTATGACTTGTCTGTATAGCTGTCATTGGGTTTTCAACAGAGATTGGGTTACATTTGCCTTTTGAGGAAGTCCTGAGTTTTAACAATGTTAAGTCTTATGGTTCTTAAACAGAACTGTCTTTCCATTTAGAGTCCATGGTTGAATTTATTCCTAAGTATATTAATTCCTTGTGATGTTGTTATAAATTGTTCTATTTTCCTAATTTTCATTTAGGATCATTGTTCATGAACAAATGCAactggcaattttacctcttcctttccatttgGATACCTCTCACTTCTTCCTCTTGCCTGATTGTTAGAATTTAGTATTGGGAGAATACTAGTGATGAAATGGGCATCCTGGTTTTATGGGACTAAAGAAAGGGCTTTGTCTCTCTTCACTGAGTATAATGTGGGACCTTCATGTATGGCTTTTACATTGTTGACCTTCCTTCTACTTTTAATTTATTCAGTTTTTATTACGACAATATTTGAATTTTATGAAATGATTTTTCTGTATCCTTTGAAATCACTGGTTTTTCTTTCATCTTGGTAGTGTATATTTcactgatgtatgtatgtatgtatgtatgtatgcattttttaaattatacagaTGTACATATGCACAAGTGTCTGTcggtgcatacatgcacactgttgtggaggtcaaaggacaaccctCTGGCATCATCCACCTTGTTTTTAGAGTCAGgatctctgactgtcctggaactctctaatTAGGTTTTATTCTTCAGATGTGTACCATCACATGACTTTCCACAGATCCTGGGGACTAAACATGAGTCTTCCTGCTTGCAAGGCAATCtacttttaccaactaagctcTCTCCAACCTATCAGATTTCTGTCATTGTTACTCTGTTAAGTCATCCTAACACTGTCAGTAAATCCTTCTTGATCATGACATAGTATCTAATACTTTTTGAATTAGATACTTTttgaaaagctttatttttattttacatgtgtgaatGTTTACCTGCATacctgtatgtctatgtgtgcctggtacccatagAGATCATCAGAGGGCATTAGtctcctgggactagagttaacAGGATGGTCGTCATCTGCCATGcaggtactaggaactgaacctaggatcctctgcaagaacaaccagttctctgaaccactgagccatctcttcaaccctacATAATCCTTTAAGGTGTTGTTGAATTCTGTTTgctagtaatttttaaattttacatttagtgtgtttgtgtatcagaggacaccttgagtcacttctaccatgtgggttttgagggtcaaactcaggttgccagactTGGCGGCTGAGCATCTCCTTGGCCCACATCAGGCTTTTTAGTTGTCAGTTTGCTATGGTTTTGGCAgtgcttgtttggttttggtaaAGGGTAATGCTGATATTTTGGAAATGCTCCCTCCATTTTTAAGTTTTCAGAATAATTTGTcaggattaattttaatttggtcaggcatggtgatgcatgcctttaatcccaacattcgagaggcaggaggatgtctgagtttgaggccaacctggtctgtgTGGCAGCTCCAAGTCACCCAAGGCTATatggtgagaacctgtctcaaaaaacaaacgaacaagcaaacaaacaaacaaacaagaccccccccaaaaaaggcagGGCAGAGGAATAGTGTTAGTTGTTTAGATGGTTGGTAGAATAGACTGTTCAAGCTACCTGGACTGGGCTTTCCTTTCCTGGGAAGATTTGGGTAGTAGATGTAATCTCACTAGAGGTCTgcctatttaaatttttttttggtttttggtttttgtttgtttgtttttgtttttttgagacagggtttctctctatagccctggctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctctggctcctgagtgctgggattaaaggtgtgcaccaccacgcccggtattttttttttctatttaaatttttaattcttcATGAATCAAAGTTggtggtttttctcttttgtctttacCTAATGGTTATGTTGATGCAATACAGTTTACAGTGCTTTGTACTTCTTATTCTTACAAAACTAGCcatgatgtcctaacccttttaaAGGTACATCACTGTGTGTATTTACAGTCacttgtgtgcaagtgtgtgcacatAGATGTGTGTGGAGGCGTAAAGTTAACGTCTCATCTTTTATCTCTATTTATTGATTAGTCTCTCAGTTGAATACAGAGCTCCTGAATGGCTAGGTATGTGCCCTAGGAatcccccacctctgcctctttaaAGTCCTGGGATTTATAGAGAGCCCCCACCCCTGCCTAGCCTTTTCACTTTCCAGGTGGagttctggggatctgagctcTGGTTTCCTGATTGCATAGGAagcactttatctactgagccatctccccattgtcctcattttgatttttttccccctttcctagCCAGTCTACCTGAAGGTTTTATCAGTTTTGAGATTTTAAAGACAGTCTTTGGGTTCTGGATTTGTttgtggttttagttttttgcttgtttgtttggttttgttttgtttttagtttcctCTGCTCTGACCTGTCTACTTGTTCTTTTCCTTGTTCATTGAAGAGTAAAGTTAGGCTGTTGAGGACTGTGCTGCATAGCTGTGAATTTGAGCATTGCTTTTGTCATAGCACAATACGTCTGGTAGTTTGTGCATTTGTTTCAGGGAGTGTTCCAGTTTTCCTGGTGGTTTCTTCTTTCAACCAGTAGTTGTTTAAAAATgccttatttattttacatatatttgtgGGTTttgtaattttacttaatatgtTAAGGCTCTTTGTGGCTTTGATATATCCCCCAAAGTATGTATTCTTCTAAGCTGTATGCTCTATTAGGGGATTAAATCCATTGACAAAGTGACTGCTGTGACTGCTAAAGGAAAGGGATCACTTgccattttgttgttttctgtgtcTTACAGTTTTGggtccttcatttcttctcttactgtttgtttgtgtgtggtttaTATTTATAGTGGCTTGTGTGatttactttaatttctttttgtgtatATTGTTTATGTGATTTTTATGAGGCTTACTTGAAACATCCTAAAGCTTCAACAATCTAAACATATTTCAATCACATGCAAAGCTTCTTTATAGCTGTATCCCTCTTTTTTACATTATCAATGTCACAAATAACATGTGAGTCCAATAACAAGTTTATAACTTTTTatgcttttctattttaaatactGTTGAATAAAAAACAGTTGTGAACCAAAATTA |
PMID - Link | Title |
---|