Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name Morf4l1P2
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Mus musculus
Coordinates chr3:59674633-59676316  UCSC
Strand +
Parental Sequence NM_024431.3
Parental seq. overlap 1628 bp
Parental seq. overlap (%) 87.2%
Genomic Region Intergenic
Retrocopy Summary Morf4l1P2, located on chr3:59674633-59676316, is a retrocopy of the parental gene Morf4l1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Morf4l1
Full Name mortality factor 4 like 1
Also known as MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002
Coordinate chr9:89973722-89996873
Strand -
Gene summary Enables chromatin binding activity. Acts upstream of or within cell population proliferation. Predicted to be located in nuclear speck. Predicted to be part of NuA4 histone acetyltransferase complex and Sin3 complex. Is expressed in several structures, including genitourinary system; limb; liver; retina; and spleen. Orthologous to human MORF4L1 (mortality factor 4 like 1). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus MORF4L1P5
Crab-eating macaque Macaca fascicularis MORF4L1P2
Rhesus Macaca mulatta MORF4L1P2
Baboon Papio anubis MORF4L1P3
Golden snub-nosed monkey Rhinopithecus roxellana MORF4L1P1
Mouse lemur Microcebus murinus MORF4L2P2
Sloth Choloepus didactylus MORF4L1P4
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Morf4l1P2
gagaGAGTAGGGGGCGGTAGTCGGGGGtggtgggagaaggaggaggcggCGAATCACTTATAAATGGCGCCCAAGCAGGACCCTAAGCCGAAATTCCAGGAGGGCGAGCGAGTGCTGTGCTTTCATGGGCCTCTTCTCTATGAAGCAAAGTGTGTAAAGGTTGCCATAAAGGACAAACAAGTGAAATACTTCATCCATTACAGTGGCTGGAATAAAAATTGGGATGAATGGGTGCCAGAAAGCAGAGTACTCAAATACGTGGACACCAATTTGCAGAAACAGCGAGAACTTCAAAAGGCCAGTCAGGAACAATATGCAGAGTGCAAGATGAGAGGGGCTGCTCCGGGGAAGAAGACATCCGGTCTGCAACAGAAAAATGTCGAAGTGAAAACATAAAAGAACAAGCAGAAAACACCTGGAAACGGAGATGGTGGCAGTACCAGTGAGACACCTTAGCCTCCTAGGAAGAAGAGAGCCCGGGTAGATCCTACCGTTGAAAATGAAGAAACCTTCATGAACAGAGTTGAAGTTAAAGTGAAGATTCCTGAAGAGCTGAAACCCTGGCTTGTGGATGACTGGGACTTGATCACCAGACAAAAGCAGCTTTTTTATCTTCCTGCCAAGAAGAATGTGGATTCCATTTTGGAGGATTATGCAAATTATAAGAAGTCTCGAGGAAATACAGATAATAAAGAGTATGCTGTTAATGAGGTGGTGGCAGGCATAAAGGAGTACTTCAACGTCATGTTGGGCACTCAGCTCCTCTACAAGTTTGAGAGACCACAGTATGCTGAAATCCTCGCCGACCACCCAGATGCGCCCATGTCCCAGGTGTACGGAGCGCCACATTTGCTGAGATTATTTGTGAGAATTGGAGCGATGTTGGCCTACACGCCTCTAGATGAGAAAAGCCTTGCTTTATTACTGAACTATCTACATGATTTTCTCAAGTACCTGGCGAAGAATTCTGCAACCTTGTTCAGTGCCAGTGATTATGAAGTGGCTCCTCCTGAGTACCATCGGAAAGCCTTCTGAGGGGTGTGCTCGCCCTCTCTCCCTCGTGCTTGGATCTCTGTAAACAGTTTGGTTCTTAGTCCTTCTTTTGTACAAATGATGTACTTTGAAGACCGTTAGTGTATAACAgagttgtttgtttcctctttgattttaaacagagaaaataaaaggagtaactgctccttttttcttccttttttcatttcAAAGTTTCTACCAGTGTATCAGTGACGGACAACAGAGAGACATgctgtagagtgtttgcctagttgACAAAGCTGCTTTTGAGTGCTGGTGGTTCTGTTCCTTTGACACTACACACTTTTATAATATGTGTTAATGCTCTATGACAAATGCTCTGATTCCTAGTGCCAAAGGTTCACTTCAGTGTATATAACTGAACACTCATCCAtctgtgctctttttttttttttaatggtgcttAAAGAGCCCATCCTTTGCAAGTCATCCATGTCATTCCTTAGGCATCTTATCTTTGCTCAACTGTTAAAGAATGGTGGCTTGTTTTCATGGGTTTTGTATTTGTGTCTAATGCACGTTTTAACATGATAGACGCAATGCATCATGTAGCTGCAGTTTTATGGAAAAGTCAATCTTGTAGGAGTTGTTTTTC
>NM_024431.3
ACCAATCCCGGCATGCCTCTGGGCGGCACGGGCGCAGGCTTGTGTGCGTAGCGGTTAGCCGTTGGCTGAGGCGGCGGCTGCGCGGGTCGCGGTGCTGTGAGGTCAGGCGGCGCTGGCAAATCGCGCCCAGGATGTAGAGCTGGCTGTGGCCGACGGCGCGTCTGACGCTGAGTTGGGTGGGGTAGAGAGTAGGGGGCGGTAGTCGGGGGtggtgggagaaggaggaggcggCGAATCACTTATAAATGGCGCCCAAGCAGGACCCTAAGCCGAAATTCCAGGAGGGCGAGCGAGTGCTGTGCTTTCATGGGCCTCTTCTCTATGAAGCAAAGTGTGTAAAGGTTGCCATAAAGGACAAACAAGTGAAATACTTCATCCATTACAGTGGCTGGAATAAAAATTGGGATGAATGGGTGCCAGAAAGCAGAGTACTCAAATACGTGGACACCAATTTGCAGAAACAGCGAGAACTTCAAAAGGCCAATCAGGAACAATATGCAGAGGGCAAGATGAGAGGGGCTGCTCCGGGGAAGAAGACATCCGGCCTGCAACAGAAAAATGTCGAAGTgaaaacaaaaaagaacaagcaGAAAACACCTGGAAATGGAGATGGTGGCAGTACCAGTGAGACACCTCAGCCTCCTAGGAAGAAGAGAGCCCGGGTAGATCCTACCGTTGAAAATGAAGAAACCTTCATGAACAGAGTTGAAGTTAAAGTGAAGATCCCTGAAGAGCTGAAACCCTGGCTTGTGGATGACTGGGACTTGATCACCAGACAGAAGCAGcttttttATCTTCCTGCCAAGAAGAATGTGGATTCCATTTTGGAGGATTATGCAAATTATAAGAAGTCTCGAGGAAATACAGATAATAAagagtATGCTGTTAATGAGGTGGTGGCAGGCATAAAGGAGTACTTCAATGTCATGTTGGGCACTCAGCTCCTCTACAAGTTTGAGAGACCACAGTACGCTGAAATCCTCGCCGACCACCCGGATGCGCCCATGTCCCAGGTGTACGGAGCGCCACATTTGCTGAGATTATTTGTGCGAATTGGAGCGATGTTGGCCTACACGCCTCTAGATGAGAAAAGCCTTGCTTTATTACTGAACTATCTACATGATTTTCTCAAGTACCTGGCGAAGAATTCTGCAACCTTGTTCAGTGCCAGTGATTATGAAGTGGCCCCTCCTGAGTACCACCGGAAAGCCGTGTGAGGGCGTGCTCGCCCTCTCTCCCTCGTGCTTGGATCTCTGTAAACAGTTTGGTTCTTAGTCCTTCTCTTGTACAAATGATGTACTTTGAAGACCGTTAGTGTATAACAgagttgtttgtttcctctttgattttaaacagagaaaataaaaggagtaactgctccttttttcttccttttttcatttcAAAGTTTCTACCAGTGTATCAGTGACGGACAACAGAGAGACATgctgtagagtgtttgcctagttgACAAAGCTGCTTTTGAATGCTGGTGGTTCTGTTCCTTTGACACTACGCACTTTTATAATATGTGTTAATGCTCTATGACAAATGCTCTGATTCCTAGTGCCAAAGGTTCACTTCAGTGTATATAACTGAACACTCATCCAtctgtgctcttttttttttttttaatggtgcttAAAGAGCCCATCCTTTGCAAGTCATCCATGTCATTCCTTAGGCATCTTATCTTTGCTCAACTGTTAAAGAATGGTGGCTTGTTTTCATGGGTTTTGTATTTGTGTCTAATGCACGTTTTAACATGATAGACGCAATGCATCGTGTAGCTGCAGTTTTATGGAAAAGTCAATCTTGTAGGAGTTGTTTTTCAGATCTTcaataaattttttctttaaatttcaa

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