Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name Cd24aP2
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Mus musculus
Coordinates chr8:13071960-13072856  UCSC
Strand +
Parental Sequence NM_009846.2
Parental seq. overlap 820 bp
Parental seq. overlap (%) 45.1%
Genomic Region Intergenic
Retrocopy Summary Cd24aP2, located on chr8:13071960-13072856, is a retrocopy of the parental gene Cd24a. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Cd24a
Full Name CD24a antigen
Also known as Cd24|HSA|Ly-52|nectadrin
Coordinate chr10:43454433-43460261
Strand +
Gene summary Enables Hsp70 protein binding activity; Hsp90 protein binding activity; and carbohydrate binding activity. Involved in several processes, including chemokine receptor transport out of membrane raft; negative regulation of cytokine production; and regulation of inflammatory response to wounding. Acts upstream of or within several processes, including positive regulation of immune response; regulation of cell-cell adhesion; and regulation of lymphocyte activation. Located in cell projection membrane; external side of plasma membrane; and membrane raft. Is anchored component of external side of plasma membrane. Is expressed in several structures, including extraembryonic component; genitourinary system; hemolymphoid system; hindlimb; and retina. Human ortholog(s) of this gene implicated in multiple sclerosis. Orthologous to human CD24 (CD24 molecule). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Cd24aP2
AGCTAGGGCTGGGGTTGCTGCTTCCGGCACTGCTCCTACCcacacagattcaatgcaaccaaATATCTGTTGCACCAGTTTCCAGTAACCAGAATATTTCTGCTTCCCCAAATCCAAGTAATGCTACCACCAGAGTGGGTGGCAGCTCCCCGCAGTCCACAGCTGGTCTCCtggcacacactctctctctcttctacatcTCTACTGTTAGAGACTCAGGCCAGGAAATGTTTCTACTTCCCATCTTCTAGACTCACCCCAAATGGCAACCACAAGTCCAATGTGACCAGGAATAAACAGGTTACCATACCTCAACAGAAAACACTGAGAATTCAAAATCTGACCAGATTAAAGGACGCGTTGAGAGAAGAGAGATGCCAATATTGAACCTGCTGGAATCTTACATTCCAAGATGAAGACGGCATCCAGAATTGATGTGATTTCCTTGAATGTGGCTTAAGAAATGTGGACACTTAAAACTCTCACTTGAAATTGGACATAGGTTTGATGTAGAGATTAGGACAGGGTGCAGAATGGAGACCCATTTTGTCATTGGTTCATCTGACCTATAAAGCCATAGTGCAGTTAGGTGATATTCAAAAGCGTCTTTCATGCTATTTATGTATATGTTAGAAGGAACTACCAGGCGTTGCTTTAAATTCCCAATTTGTTGTTTCAGTACTACTAATTTAATATGCTAAGCTCTAGGTAAAGTTCCACGTTGTGGAACTTTGACTATTCTCTTTGAAAGTGAACATTTTACACCCTCCTTCTGTGGCTTTAGATCTGGCATTGTATTTGACCTTTATTAGTAATTGACATGTATCAGGCAATGATGGATTGGAACCCACCCCCAAATCCAGCCACCACTGAATAAATCtgatttaaaaagtcaaa
>NM_009846.2
CCACCTTGCCTGCGCCCGCGCGAGCTTAGCAGATCTCCACTTACCGAACATCTAGAGAGTCGCGCCGCGCGCCGACGGAGCGGACATGGGCAGAGCGATGGTGGCCAGGCTAGGGCTGGGGTTGCTGCTTCTGGCACTGCTCCTACCCACGCAGatttactgCAACCAAACATCTGTTGCACCGTTTCCCGGTAACCAGAATATTTCTGCTTCCCCAAATCCAAGTAACGCTACCACCAGAGGGGGTGGCAGCTCCCTGCAGTCCACAGCTGGtctcctggctctctctctctctcttctacatcTCTACTGTTAGAGACTCAGGCCAGGAAACGTCTCTACTTCCCCATCTTCTACACCTACCCCAAATGGCAACCACAAGTCCAATGTGATCAGGAAGAAACAGGTCCACCTCGAATTGGCTGTTACCATATCTCAACAGAAAACACGGAGAATTCGAAATTCGACGGGATTAAAGGACGCGTGAAAGGTTTGAGAGAAGAGAGATGCCGCTATTGAATCTGCTGGAGTTTTACATCCCAAGATGAAGACAGCATTCAGAATTGATGTGATTTCCTTGAATGTGGCTTAGGAAATGTGGACACTTAAAACTCTCACTTGAAATTGGGCACAGGTTTGATGTAGAGATAAGGACGGGGTGCGGAATGGAGACCCATTTTGTCATTGATTCATCTGACCGATAAGGCCATAGTGCAGTTAGGTGATATTCGAAAGCTTCTTTGATGCTCTTTATGTATATGTTGGAAGGAACTACCAGGCGTTGCTTTAAATTCCCAATGTGTTGTTTCGTTACTACTAATTTAATACCGTAAGCTCTAGGTAAAGTTCCATGTTGTTGAACTCTGACTGTTCTCTTTGGAATTGAACGTTTTGCATCCTCCTCCTGTGGCTTTAGGTCTGACATTGTATTTGACCTTTACTAGTAATTAACAtgtgccaggcaatggtggaTTGGAACCCATCCCCAAGTCCAGCCACCACTGAATAAATCTGATTTCAAAAGTCAAACAGTAGACATTTCCCATTGTCGTTTCTCACTCACCACAAGCACCAAATTCACTAGAGTACACTGGTTCCAGAGAGCAGAATCATGTTGGCCTTGGCTAAtttcaaaatgctgtcttttacttTGGTATATGTTGAGGGCTTTTCATAATTTAAAGTGTGTTCTGTTAGCAAGGCAAAAATTATGAGTCTTAATTCTACAGGCAAATATGCAAAGGAGCCAAAACTGTAaacccagcatttgggatgtgAAGACTGGAAGCTAACTCTCATTGAATTCACAAAGTCTTTTATACAATTTCtgtacatactttttttttttttaagagaaaaacaaacggTGGATCAGAATAGCCACgtttggaatactttggttatCCATTCATATTTTTAGATAGTTATTGGTCCTGTGCCTGAAAGGGGGCTTGGTTCTACCGTAAGTTTTTCCAATTTCCTTGATATACACATACCTTCTAAAACCTAGACATTTcctgaaaaaaatcttttgttcGCATGGTCACACACTGATGCTTACCCGTACAGTAGTCTTGATAACCAGAGTCATTTTCTCCATCTTTAGAAACCTTCCTGGGAAGAAGGAGAGCTCACAGACCCGAAgctactgtgtgtgtgaatgaacacTCCCCTTGCCTCACACCTGAATGCTGTACATCTATTTGATTGTaaattgtgtttgtgtatttatgcTTTGATTCATAGTAACTTCTCATGTTATGGAATTGATTTGCATTGAACACAAactgtaaataaaagaaagaaatggcggAGA

Publications

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