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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC103890783P1
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Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr3:138647682-138648413  UCSC
Strand -
Parental Sequence XM_009241349.2
Parental seq. overlap 635 bp
Parental seq. overlap (%) 83.9%
Genomic Region Intragenic (RASA2)
Retrocopy Summary LOC103890783P1, located on chr3:138647682-138648413, is a retrocopy of the parental gene LOC103890783. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC103890783
Full Name N/A
Also known as -
Coordinate chr5:176322048-176323607
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens MSANTD5P2
Bonobo Pan paniscus LOC103785913P2
Gibbon Nomascus leucogenys LOC115833704P1
Marmoset Callithrix jacchus LOC103790613P2
Chimpanzee Pan troglodytes Without Homology
Gorilla Gorilla gorilla Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC103890783P1
AAAAAAGCAGTCCAGGGACCAGAAAAGCCCTCAGTCCAGTTAATTAAAACCATGGAGTAGCCAGGAAGTCCAGAGTTTCCTGCAAGAATGGGAATTCCTTGAGCGTGAAGTGTACAGGGTGAAGAAGTATCTCACAGTATCAAAAGCAATTGCCCCGCATCTCAAGCACAGAGGTATAAAGAAGAGCTGGCAGGAATGTCTCCAGATGCTGATAAGCTTGCAGGACTTACACTTCACTATTCATGAGGCCAAGCAGGGGCCAAGGTGCCACCCCTCGCAATGTCCTTATGGAGAGGCCCTGCACAGGATTCTGGGATACAGATGGAAGATCAGCAACTTCTCAGGTCCTCCCTGTGCTGATGTGGCTGACCTTGCACCTCCCGAGCACCAGCCCCAAGCCTATGGCATTCCTGGAGACTTTCAGGAGCCGATGTGGGCCCCAACACCTGTGATCTACATGGAAAATGCTCAGGTACCCACCCAGATGGGAGCCCTGGAACATGAACCCGCCATGGTCAGTTCTACAGATGTATCCTGCCTTTCTCTCAGCAGCCCCGGGCCCTCCACCACAGTGGTCCATCTCTACTGACCGATCCAGATTTAGAAGACAGTTAGAATATGGATCCTGATTCTATCAGAAAGACTGAAAAACAGCACAATCTGTGTGTGTTGGTGCATGACTCCTTCCTCTCTTTGCCTGGTACAATAAGAATAAATGTGAAATAAATGAAT
>XM_009241349.2
ATGGAGCAGAAAAACGCAGCCCAGGGATCAGAAAAGCCCTCAGTCCAGTCAGCTAAACCTTGGAGTGACCAGGAAATCCAGAGTTTCCTGCAAGAATGGGAATTTCTCGAGCGTGAGGTGTACAGGGTGAAGAAGAAGTATCACATAGTATCAAAAACAATTGCTCAGCGTCTCAAGCAGAGGGGTATAAAGAAGAGCTGGAAGGAATGTCTGCAGATGCTAATAAGCTTACAGGACTTATACTTCACTATTCAGGAGGCCAACCAGAGGCCAAGGTGCCAACCCTTGCCATGTCCTTATGGCGAGGCCCTGCACAGGATTCTGGGGTACAGATGGAAGATCAGCGTCTTCTCAGGTCCTCCCTGTGCAGATGTGGTTAACCTCGCACCTCCCGAGCACCAGCCCCAGGCCTATGGCGTTCCCATCGTCTTTCAGGAGCCGATGTGGGCCCCAACACCTGTGATCTATGTGGAAAATCCTCAGGTACCCGGATGGGAGCCCTGGAACATGAATGGTCATGTTCCATATATGTATCCTGCTTTTGCCCCGGCAGCCCCAGGCCCCCTGCCACAGTGGGCCATCTCTACTGACTGATCCAGATCTTGAAGACATGTATAATCTGGATCCTGATTCGTCAGAAAGACTGAAAAACAGCACGATCTGTGTGTGTTAGTAAATGACTCCTTGCTCTCCTCACCTGGTGCAATGAGAATAAATGTGAGATAAATGAACGACCGTGACCTC

Publications

PMID - Link Title
No publications available for this retrocopy