Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC103892985P41
Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chr18). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr18:45928649-45929196  UCSC
Strand +
Parental Sequence XM_024236009.1
Parental seq. overlap 453 bp
Parental seq. overlap (%) 63.1%
Genomic Region Intragenic (MRO)
Retrocopy Summary LOC103892985P41, located on chr18:45928649-45929196, is a retrocopy of the parental gene LOC103892985. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC103892985
Full Name N/A
Also known as -
Coordinate chr18:44600697-44617471
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL17P46
Chimpanzee Pan troglodytes RPL17P48
Gorilla Gorilla gorilla RPL17P48
Gibbon Nomascus leucogenys RPL17P9
Green monkey Chlorocebus sabaeus RPL17P40
Crab-eating macaque Macaca fascicularis LOC101867070P50
Rhesus Macaca mulatta RPL17P49
Baboon Papio anubis RPL17P58
Marmoset Callithrix jacchus RPL17P48
Mouse lemur Microcebus murinus LOC105874256P33
Dolphin Tursiops truncatus RPL17P50
Bonobo Pan paniscus Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC103892985P41
GCCTGGGGTAATCTCTGAAAATGGTTTGCCTATCCCCTGACCCAGAAAACTCCACAAAATCATGCAAACCAAGGGGTTCAAATCTTTATGTTCGCTTTAAGAACACCCACGTAACTGTGCAGGCCATCAAGGTATGCATACCCAAAAAACCACCAAGTACCTGAAAGATGTTACTTTTCAGAGGCACTGTGTGCCTTTCCATCATTACAAAGGTGGAGCTGGCATGTGTGCCCAGGCCAAACAATGGGGCTGGACGCAGGGTTGGTGGCCCGAAAATGTGTTGAATTTTTGCTGCATGTGCTTAAAAATGCAGAGAGCAATGCTGAACTTCAGGGTTTAGATGTAGATTCTTGGATCATTGAGCACATTCAGTTGAGCAAAGCCAAGATGTACACCATATTTACAGAGCTCATGGTCAGATCAACCCATATGAGAGATCCCCCTGCTACATGGAGATGATCCTCGCTGAAAAGGAACAAATTGTTTCTAAACCAGAAGAGATATTTACACACAAGAAAAAGGTATCCCACAAGAAACTGAAGAAACAA
>XM_024236009.1
CCTGCCTCCTCAGATCTCGTTTCTTCGGCTACGAATCTCGCGAGAAGTCAAGTTCTCATGAGTTCTCCCAGAATCCACCGCTCTTCCTCTTTCCCTAAGCATCCTGAGGTCATCTGTGAAAATGGTTCGCTATTCACTTGACCCGGAGAACCCCACGAAATCATGCAAATCAAGAGGTTCCAATCTTCGTGTTCACTTTAAGAACACTCGTGAAACTGCTCAGGCCATCAAGGGTATGCATATACGAAAAGCCACGAAGTATCTGAAAGACGTCACTTTACAGAAACAGTGTGTACCATTCCGACGTTACAATGGTGGAGTTGGCAGGTGTGCGCAGGCCAAGCAGTGGGGCTGGACACAAGGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAACGCAGAGAGTAATGCTGAACTTAAGGGTTTAGATGTAGATTCTCTGGTCATTGAGCATATCCAAGTGAACAAAGCACCTAAGATGCGCCGCCGGACCTACAGAGCTCATGGTCGGATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACAGAAAAGGAACAGATTGTTCCTAAACCAGAAGAGGAGGTTGCCCAGAAGAAAAAGATATCCCAGAAGAAACTGAAGAAACAAAAACTTATGGCACGGGAGTAAATTCAGTATTAAAATAAATGTAATTAAAAGGAAAA

Publications

PMID - Link Title