Retrocopy Name | Arfgef2P1 |
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Species | Mus musculus | |
Coordinates | chrX:116219960-116220199 UCSC | |
Strand | - | |
Parental Sequence | NM_001085495.2 | |
Parental seq. overlap | 215 bp | |
Parental seq. overlap (%) | 2.4% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | Arfgef2P1, located on chrX:116219960-116220199, is a retrocopy of the parental gene Arfgef2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | Arfgef2 |
Full Name | ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) |
Also known as | BIG2|E230011G24Rik |
Coordinate | chr2:166647371-166739972 |
Strand | + |
Gene summary | Predicted to enable several functions, including GABA receptor binding activity; guanyl-nucleotide exchange factor activity; and protein kinase A regulatory subunit binding activity. Predicted to be involved in several processes, including Golgi to plasma membrane transport; positive regulation of tumor necrosis factor production; and receptor recycling. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in several cellular components, including Golgi apparatus; microtubule cytoskeleton; and recycling endosome. Is expressed in brown fat; central nervous system; duodenum; thymus; and trunk. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARFGEF2 (ADP ribosylation factor guanine nucleotide exchange factor 2). [provided by Alliance of Genome Resources, Apr 2022] |
Species | Scientific Name | Retrocopy | |
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Human | Homo sapiens | Without Homology |
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Chimpanzee | Pan troglodytes | Without Homology |
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Bonobo | Pan paniscus | Without Homology |
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Gorilla | Gorilla gorilla | Without Homology |
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Orangutan | Pongo abelii | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>Arfgef2P1 |
AGGATCCTGTTTAGAATGTATATTGAGGGGAAACCGCAGAGATTCTTGGGGCAAAATACAGCAGCAACTTCTAACTGTATGCAGTGAAGCACTTGCCTATTTCATTACTGTGAACTTTGAGAGCCATCGGGAAGCATGGACGAGCCTCAGGCTGTTACTTCTAACCAAAATCCTCAAGATAAATGATGAAAAGTTCAAAGCACATGCATCAGTGTACCCCTACCTGTGTGAAATTATGCT |
>NM_001085495.2 |
GGGGCGTCTCTTCCTGACAGGGCGGCGCGCACGGACGCGGCCGGTGCCGGCCGGGTCGCCGGGCCCTCAGCCTCGCTCTCCTGCTCGCTCGCACCGCCGGCTCGCGGGGTCGCCGGCCCCCGCAGGCCGGGGCCATGCAGGAAAGCCAGACCAAGAGCATGTTCGTGTCCCGGGCCCTGGAGAAGATCCTAGCTGACAAGGAGGTGAAGCGGCCCCAGCACTCCCAGCTGCGTAGGGCCTGCCAGGTGGCGCTCGATGAAATTAAAGCAGAACTAgaaaagcagagGCTTGGCGCTGCGGCTCCACCAAAGGCAAACTTCATTGAAGCTGACAAGTATTTCCTTCCATTCGAGCTGGCCTGCCAATCCAAGTCACCTCGGGTGGTCAGCACATCCCTGGACTGCTTGCAGAAACTCATCGCATATGGACACATCACTGGCAATGCCCCTGACAGTGGCGCTCCTGGGAAGCGGCTGATCGACAGGATCGTTGAAACCATTTGCAATTGTTTTCAGGGCCCTCAGACAGATGAAGGGGTTCAGCTACAAATCATTAAGGCTCTGCTGACTGCTGTGACATCCCCACACATTGAAATCCATGAGGGCACCATCCTGCAGACAGTGAGGACCTGCTACAATATCTATCTGGCCAGCAAAAACCTCATCAATCAAACCACCGCCAAGGCCACCCTTACCCAAATGCTGAATGTCATCTTCACCCGCATGGAAAACCAAGTGTTACAGGAGGCCAGAGAATTGGAAAAACCAATGCAGTCAAAACCTCAGTCCCCGGTGATCCAGGCCACAGCAGGCTCTCCCAAGTTCAGCCGCCTGAAGCAGAGCCAGGCCCAGAGCAAACCCACGACTCCTGAGAAAGCAGAGCTGCCCAATGGGGACCATGCCCAGAGTGGCCTAGGAAAAGTGAGCTTGGAAAATGGAGAAGCTCCCCGAGAGAGAGGCTCGCCAGTCTCTGGGAGAGCCGAGCCTTCGAGGGGCACTGACAGTGGAGCTCAGGAGGTGGTGAAGGACATCTTAGAGGACGTGGTCACGTCTGCTGTGAAAGAAGCAGCAGAAAAGCATGGTCTGCCGGAGCCCGACCGAGCCCTGGGTGCCCTAGAGTGCCAGGAATGCGCTGTTCCTCCTGGAGTTGATGAAAACTCACAGACCAACGGCATAGCAGACGACAGGCAGTCGCTATCCTCCGCAGATAATCTGGAACCAGATGTTCAAGGACACCAAGTGGCTGCTAGGTTCTCTCACATTCTACAGAAGGATGCCTTCCTGGTGTTCCGCTCCCTGTGCAAGCTGTCCATGAAGCCCCTTGGGGAAGGGCCACCAGATCCAAAGTCCCACGAGCTTCGTTCCAAGGTGGTTTCCCTGCAGCTGCTCCTCTCTGTGCTGCAGAATGCTGGCCCAGTCTTCAGGAGCCACGAGATGTTCGTCACTGCCATTAAGCAGTACCTGTGTGTGGCCCTTTCCAAGAATGGCGTGTCCTCAGTGCCTGACGTCTTCGAACTCTCGCTTGCTATTTTTCTTACTCTTCTTTCAAACTTCAAGATGCACTTGAAAATGCAGATAGAGGTCTTTTTCAAAGAGATTTTCCTGAACATTTTAGAAACATCCACAAGTTCTTTTGAGCACCGCTGGATGGTCATTCAGACCCTGACGAGGATTTGTGCAGATGCCCAGTGCGTTGTGGATATTTATGTCAACTACGACTGTGACTTAAATGCTGCTAACATTTTCGAGCGACTAGTAAATGACTTATCCAAAATTGCTCAGGGAAGAAGTGGACATGAGCTGGGGATGACACCTCTACAGGAGCTCAGTCTGAGGAAGAAAGGCCTGGAGTGTCTGGTGTCTATTCTCAAGTGCATGGTGGAGTGGAGCAAGGACCTGTATGTGAATCCCAACCACCAGGCTACCCTGGGTCAGGAGAGGCTCCCAGATCAGGAAATGGGGGACGGAAAAGGCCTTGACATGGCAAGACGGTGCAGCGTGACATCCGTGGAGTCCACAGTGTCCTCGGGGACCCAGACAGCCATTCAGGATGACCCAGAGCAGTTTGAGGTCATCAAACAACAGAAGGAAATCATTGAGCATGGCATTGAGCTCTTCAATAAGAAGCCCAAGCGAGGTATCCAGTTTCTCCAAGAGCAAGGCATGCTGGGAGCAGCTGTAGAAGATATTGCCCAATTTCTGCACCAGGAGGAGCGGCTGGATTCTACCCAGGTTGGCGAGTTTCTGGGAGACAGCACGAGGTTTAACAAGGAGGTGATGTATGCCTATGTGGACCAACTGGATTTCTGTGAAAAAGAGTTCGTCTCAGCCCTGAGGACATTCCTGGAGGGCTTCCGCCTGCCTGGGGAAGCCCAGAAGATTGACCGGTTAATGGAGAAGTTTGCTGCACGATACATAGAATGTAACCAAGGGCAAACCCTGTTTGCTAGTGCGGACACTGCGTATGTCCTGGCGTACTCCATCATCATGCTGACCACAGACCTGCACAGCCCACAGGTAAAGAATAAGATGACAAAAGAGCAGTATATTAAAATGAACCGGGGCATCAACGACAGCAAAGACCTGCCTGAGGAGTACCTGTCCAGCATCTATGACGAGATAGAGGGCAAGAAGATAGCGATGAAGGAGACAAAGGAGCACACAATTGCGACCAAGTCCACCAAGCAGAGTGTAGCTAGTGAAAAGCAGAGGCGGCTGCTGTACAATGTGGAGATGGAGCAGATGGCTAAAACAGCCAAAGCTCTGATGGAGGCCGTGAGCCATGCCAAAGCCCCGTTTACCAGCGCCACACACTTGGACCATGTCCGGCCAATGTTCAAACTGGTGTGGACGCCGCTGCTGGCAGCCTATAGTATTGGCCTGCAGAACTGTGATGACACGGAGGTGGCCTCCCTGTGTTTGGAAGGCATCAGGTGTGCAGTCCGCATTGCCTGCATCTTTGGAATGCAGCTGGAACGAGATGCCTATGTTCAGGCCCTTGCTCGCTTTTCCCTGCTGACAGCCAGCTCCAGCATCACAGAAATGAAGCAGAAAAACATCGACACCATAAAGACACTCATCACTGTGGCTCACACCGATGGCAACTACCTTGGCAACTCCTGGCATGAGATCTTGAAGTGCATCAGCCAGCTGGAGCTTGCTCAGCTGATAGGAACTGGGGTGAAGACTCGCTACCTCTCTGGCTCTGGGCGGGAACGAGAAGGGAGCCTGAAGGGCCACAGTCTGGCAGGAGAAGAATTCATGGGTCTTGGCCTCGGTAACTTGGTGAGTGGTGGTGTAGACAAAAGACAGATGGCCAGCTTCCAGGAGTCGGTTGGTGAAACAAGCTCACAGAGTGTGGTTGTCGCAGTTGACAGAATTTTTACTGGCTCTACCAGACTGGATGGAAATGCAATAGTTGACTTTGTCCGTTGGCTGTGTGCTGTGTCCATGGATGAGCTGGCTTCTCCCCACCATCCTCGAATGTTCAGCCTGCAGAAGATTGTGGAAATATCATACTACAACATGAACAGGATCCGGCTGCAGTGGTCTCGGATATGGCATGTCATTGGAGATCACTTCAATAAGGTCGGCTGTAACCCCAATGAAGATGTGGCCATCTTCGCAGTTGACTCTCTGCGGCAGCTCTCCATGAAGTTCCTGGAGAAGGGAGAATTAGCCAACTTCCGATTTCAGAAGGATTTTCTGAGGCCATTTGAACATATTATGAAGAAAAACAGGTCCCCGACCATCCGGGACATGGTGATCCGATGCATCGCTCAGATGGTGAGCTCCCAGGCAGCCAACATCCGCTCAGGCTGGAAGAACATCTTTGCTGTGTTCCACCAGGCTGCCTCTGACCACGATGGGAACATTGTGGAGCTGGCCTTCCAAACCACAGGCCACATCGTCTCAACCATCTTCCAGCACCACTTCCCTGCAGCCATCGACTCCTTCCAGGATGCTGTGAAGTGCTTGTCTGAGTTCGCCTGCAATGCAGCTTTCCCTGACACCAGCATGGAGGCCATCCGGCTCATCCGCTTCTGTGGGAAATACGTCTCAGAGAGGCCTCGGGTGCTGCAAGAGTACACAAGTGATGATATGAATGTGGCTCCTGGTGACAGGGTCTGGGTCAGAGGCTGGTTTCCCATCCTGTTTGAACTCTCCTGCATCATTAACAGATGCAAGTTAGATGTACGCACAAGGGGACTCACGGTCATGTTTGAGATTATGAAGAGCTATGGCCACACCTTTGCAAAGCACTGGTGGCAGGACCTGTTCAGAATCGTGTTTCGAATTTTTGACAACATGAAACTCCCTGAGCAACAGTCAGAGaaatcAGAGTGGATGACGACCACGTGCAATCATGCACTGTACGCTATTTGTGACGTATTCACCCAGTTCTACGAAGCTTTGCATGAAGTGCTTCTCTCTGATGTGTTTGCGCAGCTGCAGTGGTGCGTGAAACAAGATAATGAGCAGTTGGCCCGATCAGGTACGAACTGCTTAGAGAACCTAGTGATATCCAACGGCGAGAAGTTCAGCCCTGCTGTCTGGGATGAAACCTGCAATTGCATGTTGGATATTTTCAAAACCACCATCCCACATGTTTTGCTGACGTGGAGACCTGCggggatggaggaggaggtgtcAGATAGACATCTGGATGTGGACCTAGACCGCCAGTCTTTAAGCAGCATAGACAGAAACGCCTCCGAGAGAGGACAGAGCCAGCTGTCCAACCCCACTGACGACAGCTGGAAGGGGGCACCGTATGCACATCAGAAACTGCTGGCCAGCCTCCTCATCAAGTGTGTGGTTCAGCTGGAGCTGATCCAGACCATTGACAACATCGTGTTCTACCCTGCCACCAGCAAGAAGGAGGATGCGGAGCACATGGTTGCTGCCCAGCAAGACACCCTCGATGCAGAGATCCACATCGAGACGGAGAATCAGGGCATGTACAAGTTCATGTCCTCCCAGCACCTCTTCAAGCTGCTGGACTGCCTGCAGGAGTCCCACTCCTTCTCCAAAGCCTTCAACTCCAACTATGAGCAGCGGACTGTCCTCTGGCGAGCTGGCTTCAAGGGCAAGTCCAAACCCAATCTTCTCAAACAAGAAACCAGCAGCCTGGCCTGTTGTCTAAGGATCCTGTTTAGAATGTACGTTGATGAGAACCGCAGGGATTCCTGGGACGAAATACAGCAGCGACTTCTAAGAGTGTGCAGTGAAGCACTTGCCTATTTCATTACTGTGAACTCCGAGAGCCATCGGGAAGCATGGACGAGCCTCCTGCTGCTACTTCTAACCAAAACCCTCAAGATAAGCGATGAAAAGTTCAAAGCACACGCGTCAATGTACTACCCCTACCTGTGTGAAATTATGCAGTTTGACCTGATCCCTGAGCTCCGAGCAGTTCTGCGAAAGTTCTTCCTGCGGATAGGCCTGGTGTATAAgatatggattccagaagagcCGTCGCAAGTGCCAGCAGCACTGTCATCGACCTGGTAGCACTGGCTGCATGGCCACTGCTGTGGTTCTGTAGAACATCCGCCATGCCGTCCCAGCTGGCGGAGGGGGAGCTGCCCACCTAGCTGGGTTTGGACCTGGAGTGCAGTGGCGTGAACCCTGGTCAGCACAGTCCCCAGCGGAGGCTCATGGTGTCTCATTAAACCATCACATACCAGTAACTCGGTGGGCAGGGAGTCTGTTCCCCCGTCCTTGCATTCCGCTGGCTGACCTGTTAGACCTGTCCTTGTGAATGCCACCGTTTCCTCTAAGACTGGCCATTAATGTTTCGTCGGCGGAAGTCGCTCTCCTGGGAGGCAATGAGCATTGCCGTATAGGTTCCTGTTTATTAGAGAGTATGCTAATAAAAGTCCTTGTAatagctcacagccacctaaGTGCGCGGTGTTTTGTTGTTTGACTGTGTTAGAGAAGTTTGAATGTTTGTGTCAGTTTTGGGTCAGCCTAGATAAAGATGGGAAAGAGGGAGTGTTCCTTATGTCTTGTTTTGTAATTGTTTGAGtggtttctaaaatattttacaaagatatattattaaaaatttgaTTAAAGGCAGAGTTTAGTAGACTTAAGAGCTTGCAAGGTTTTAAGAAAATGTAGTGCCTCGTGGCTCCCTGGTTTAGTAACTTGGAGAGACAGTCTGTAGGAAAAAGATAATCTAAAAAAAGGTGTTAGCCTTCCTTGAAGTATTTGTGGGTGGATGTTCCGTTAAATTTTCCAGAATGCATTGCACATCTTTTTATGAAATCTAGACTATGAAAAGGTGATAAACATGAAGTAACTGACCCAGAGTTGGTTTATCTTTGAGTAAACCTTTTTAGTTTTTACCTCAGCAGAGTGTTAGTATGGCTGCTTTGCAGTCCCTGCTAAAGGGACCACCAGAGGGAGGGACAGTTCGTACGGCCCTCTCAGCACGCGTCATGAGTGGGACTGGAGCCCCTGCGGGACTAGCACAGCTGGGCTGTGACAGTGGCAGAGGTGGCACCCAGAGCTTCTGTTAACTTGAGCCGGGAGCTGGGTTCTTTAGCAAGATGAGCTTCTGGGGTCCTTATGTTGGTAATGGTGCCATGTCCAGACCCACAGCAGAGTGAAGTCTGAGTGCTCCTAACAACCCACAGCAGCCACGCTAGAAGCTTAATGGATTCGGAGCCCATGAGAGAAAGAACACAGGcttcctggtctgccctcccCCTCCGCTCACCAGGAGCTAAACTGAGAGGCTAAACTGTGTCATGAAGCGCGTTGGAAACAGACTTCTGCCTACATCGAGTCCTACGAATTGGGGTTGTATTGATGTCACTCTGGTGCCTTAGAAGTCAGTCGTCCTTGGGAAGGTGTCTGCGAGACTGggccctttcttctctccagagCAGGATGCCTGGTGCTCTTGCTATTCTCTCTCTCGTTTCTGACAGCCTTGGCACATGCTCGGTTTGGCCAGTAGAATTTgtatttatgctttttttttccccaaaagtattttaatttctctaccaaagggggaaaagaaagcaggctgaggttATTATTGCTAACACACCTCAGCCGAGCAGGCTATGTACCTCGAAGGGAGGGCCTGGGGGACAATGTTACCGAGAGGAGAATGTGAGCACATTTGACTGACACGGCCTGGAACCCAGTGCATCTTTTCACGGCACTGCCGAGACGTACTCCCTGGTGTTGCCGCTCACAGGCCCTCAGCTGTCGGTGGTTCCTGCAGCTTTTGTTCCTCGCATGTAATCAGGGAGCACGCATGCACGTTGAGTGGGTGCATCCTGCCTAAGCTGTGTCCCTGAGTGGTGGCTTTCCCTCCTGTCACGTGACATCCCATTCACTCATCTACACTAGCCCAGTGCTCCCATTGTCCCCTGCCTCCTCTGTAATTTTTGCCCCTTCCAGGGTACGGAATGTGTCAGTGCATTTTCTCCTTGCTGagagtctcagctccaatctCTTCATAATTTTGTTCTGTAAAAGATGAACCTTTCCGAGTGATGCATTCAAACTGTCTAGCAATAGATCTTTTAAAACGATGTAAAACCATTCAGGGTAATTTTTCTTGTCAGTGGCCAGTGGCATCCCTGACCTCCAGAAAGAAGCCATGCAGTATAAACTCCTTGTGGTGAACAAGTCTGTTCATGGCAAACGTGGCTCGAGCCCACCAGACACCAGCGCAGAGCGGGGGCAGCCTGCCCCGCTGTAGCACAGGAGCAATGGTGTAGCGTCTTCCAAGGCCTTACTTTTTTTTCAGAATGCTTTAAGTGTTGGCTGTATGTGCTGGGTTCTCTAAAGAAGTTTCTCTTCCCGAGCTGTTTTTCCGAGCAGTTTTGTTCGTGTCTCTTAAGGAAATCACCAGCTTTGGCATCTGACCAACAAACAGTGAGTGGGAGACGTGATTTCCGATGCGCATCTTCAGAGTCAAACACACCCTCCCTCGTGTACAACCAAAGAACAGGCATTATGAAATTGTATAGTAATATCTAGAAACACCACTTCCCTCCAACCTGCGACTTTTGTACAAAATTCAGAGAATCTGTAAAGAACCCCCCACCCCTCAAAAAAGCCTAAGCACTTGctgttgttcttttgtgattatggcTGTACATTTAGTTGTCTTTCTAGTTATGAAAAGAACGTTGACACACGTAGGCATGGCCGCCCCACTCAGGTGTTCGTTGTTACAGTGCTAATGGATCCTGGGTGCAGTAGGCGCTGGGTCCTCCTGACCTCTGTTTCACTGTTTGTGGTAAGGTAGCCACACCTGGAGCTCACGTGTAACCTGGAGCGCTGTGCTACCAGTAGCTTTGGGGTTTTGGAAGCAGACACACCAAAGCCGagcatcatagagaatgaatccctCTGGAAACACTTACTCTCAGAAAATGACACTCTTCCCACATGTGGGGTTTTCTCAGTGTTCTAAGTTTTTAAGAAGTTTTATCTTGTGTATTTGCatcaaacatttctttatgtgctaaATGTTTGCTCTTTAAAAATGTCTCAGAGTTAGTTACCAGCTTCCTTGATTTCATCTATACACAATGATTAAGTGCATTTAATATTGGTAATTTAATGAAAAGCATTCCTTGCCCAATGGATGTAAACATTTTTGAAAGAATAAAGCAGAATTATATAATATGAAATGCTATGTAAAGTTTTCTATGTAAaaaaatattatgtataataCTGTTAAATACCCCATGCTTTGATCAGGTGGAAAAAatcaataaagttttaaaaagtaaa 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