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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name 1810037I17RikP1
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Mus musculus
Coordinates chr17:15393725-15393994  UCSC
Strand +
Parental Sequence NM_024461.2
Parental seq. overlap 251 bp
Parental seq. overlap (%) 25.7%
Genomic Region Intergenic
Retrocopy Summary 1810037I17RikP1, located on chr17:15393725-15393994, is a retrocopy of the parental gene 1810037I17Rik. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name 1810037I17Rik
Full Name RIKEN cDNA 1810037I17 gene
Also known as 5730414I01Rik|Aln
Coordinate chr3:122718046-122719843
Strand +
Gene summary Acts upstream of or within negative regulation of ATPase-coupled calcium transmembrane transporter activity and negative regulation of calcium ion binding activity. Located in endoplasmic reticulum membrane. Is expressed in several structures, including brain and neural retina. Orthologous to human C4orf3 (chromosome 4 open reading frame 3). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>1810037I17RikP1
GACCTCTTGCCCTGACCGGTTTGCTGAGTCAAGAATGGGGCTTCTGGACTGAATCTTGAAAACTACTATAGACTCTTGAATGAAGAGGACTTCCAGCAGCTGACTTCCACACCTCTGACCTTTCCTTCAGCCCTTGACCTCCCTAAAGTAGTACCATATGTTTCAAACCTGTTTTTAATGGTTGAATTAATGATTGTAGCTAAATgatatctaatatatatttttaataatgtctATCACTTAAGTACTTAAgggaaataaatgtatgta
>NM_024461.2
AGACTGGGCGCGAAGCGGTCTTCAGGTTTGGTCTCAGTTGCGCGGAAGTGAAACGACGCGGAGATGGAGGTGAGCCAGGCGGCGTCTGGTACCGACGGTGTCCGGGAACGGAGGGGCTCGTTCGAAGCTGGAAGGAGGAACCAAGATGAGGCACCTCAGTCCGGGATGAACGGGCTTCCGAAACACTCCTACTGGCTGGATCTCTGGCTCTTCATCCTTTTCGACCTGGCCTTGTTCGTCTTCGTGTACCTCTTGCCCTGACCGGTTTGCTGAGTCAAGAATGGGGCTTCTGGAGTGAATCTTGAAAACGACTATAGACTCTTGAATGAAGAGGACTCCAGCAGCTGACTTCGGCACCTCTATCTAACCTTTTCTTCAGCCCTTGACCTCACTAAAGTACTATCATATGTTTAAAACCTGTTTTTCATGGTTGAAGTAATGATTGTAGCTAAATGatagataatatatatttttaataatgtctGTAACTTAAGTACTTATGGGaaataaatgtatgtaaaaaaaaaaagttatctttgTGAAGCTTACTTTctcaaatattgttttaaaactatgctattataaaataattatctaGAGTTGAATAGGTAGCACTTACTCAGAAAGGCCACAGTCCCAAAGCAGCTACTAGAAACATTTTGGAAGCTGTTCCTTGTCATCTTAAGACCTGGGTGATTAGAAATTCTTTACTGTTGGTTTTAGTGCTATTCAGTATATGAGAACTGTCTAAAATACTCAGAGGGGGTGTTCTTCTCCCTTATAATTCACACTATTTGGTGAACTGTTTACAGTTGTCTTAAGATACTGTTGCATTTGCTTGGGTAATTTTTGTGCAAGGTGTAACTGAAGTATGCGTATTAGCACACAGGGCCGAGGTGACTCTTGAGTTCACCACACTCTGGGACCTGCTTACTAATTTTCTCTAATAAATGTTTAATCACTGAATTTAGTTTCA

Publications

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