Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name Atp2b1P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Mus musculus
Coordinates chr3:80908300-80910013  UCSC
Strand +
Parental Sequence NM_026482.2
Parental seq. overlap 1561 bp
Parental seq. overlap (%) 21.9%
Genomic Region Intergenic
Retrocopy Summary Atp2b1P1, located on chr3:80908300-80910013, is a retrocopy of the parental gene Atp2b1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Atp2b1
Full Name ATPase, Ca++ transporting, plasma membrane 1
Also known as 2810442I22Rik|E130111D10Rik|Pmca1
Coordinate chr10:98750243-98862005
Strand +
Gene summary Predicted to enable P-type calcium transporter activity involved in regulation of presynaptic cytosolic calcium ion concentration and PDZ domain binding activity. Involved in several processes, including negative regulation of cytosolic calcium ion concentration; positive regulation of bone mineralization; and regulation of vascular associated smooth muscle contraction. Located in basolateral plasma membrane and immunological synapse. Is integral component of presynaptic membrane and integral component of synaptic vesicle membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; integumental system; and sensory organ. Orthologous to human ATP2B1 (ATPase plasma membrane Ca2+ transporting 1). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Atp2b1P1
ACGCTTACAGTTTCTAAAAGAAGCTGGTCATGGAACACAGAAGGAGGAGATACCTGAGGAGGAATTAGCAGAGGATGTTGAAGAGATTGACCATGCCGAAAGGGAGTTGTGGCGTGGCCAGATCTTGTGGTTTAGAGGCCTGAACAGAGTCCAAACACAGATCCGAGGGGTGAATGCATTTCGTAGTTCTTTATACGAAGGGTTAGAGAAGCCAGAATCAAGAAGTTCAATCCACAACTTTATGACACGCCCTGAGTTTAGGATAGAAGATTCAGAGCCGCACATCCCCCTTATTGATGACACTGATGCTGAAGACGACGCCCCTACAAAACGCAACTCCAGACCTCCACCCTCtcctaacaaaaataacaatgcTGTTGACAGCGGAATTCACCTTACAATAGAAATGAACAAGTCTGCTACCTCTTCATCCCCAGGAAGCCCACTACATAGTTTGGAAACATCACTCTGATTGTAAGCTGAATGGTAACACACTAGCTGCATTGTAAAGAAACAAATCGAAACTGAGTCTTTTCACATATTGTGACGGACAAGATAGTATTCTTGTCTCTGGACTTCAACAGAAGATACACTTGTACGAAtgtagatttatttagctttCTGCCAGACTGAGGGTGCTTTTTTGGGGTGTGGGAGAAACGAACTGACAGATAAACAGCGGTGACTCGGCATGAGTGGCCTGTGGGTCGTCAGTGGTACCTAACGTTGTCCTGACTAGCAGAGCTGTGGTTTATCTCAGTTCATgatggcagggagggaggagtgaCTCTGGATGAGACAGAGAGCCCTGGATCATTGAGTGAATACTTTAATTTCTGCTGTTGGCTGTTAATAATTTGGATTATTTACGTTTATAAATGATACAGATCTGTTTACAAGGTTTGTAGAtaatttttttgttcttcataGACGGGAAGTTTCCTTATAGTAATGCAGAGAAAAATTAGTCCTTCAAATACTGCTGTATTTTCagtgaaaaaaagggggggtgttTCTATTGAAACTGTAATAAAATTTTGCCTACAATTTATCTTGTTACATATGTAGATAAATTGCTAATACTAATAGCCAAATAGATAACACTAatgatttgtttaaccatgAGCAGTGGTGTTCTAATGAAGTTATGGCATCTGTCCTAACTAGTTTCTTAAATACATTTACTACTTAATGGCTTTGAAAGaactgtttaatttttaaatgttttgaaaaCTTGCTAATAACCTTTTGTTCAGAATTTAGTAGATTGTTTATTGTGGGACATCAAATACACAATGAAAGATGCTTGAAATGCCTTTGTTATTTCAGGCCAATCAAATTAAACTATCAAAGTACAAGAGAAacctatctaaaTATGTTAGTTCAGTGATGTCTTAGTGAACTGTGAGTGATTGCATTGATTTTTCTAATAACTCCGTAGATACCTTCACACAGCATAGAGGGGGCTGTTGGCATTTTGAGAAAGGTTAAGAGAGAGAGGCATacatcttttccttttgtttttgaaacttgtttgtaaacataaataaatatgcccttttattaaataaatacacagcAATGGTtcttcagaca
>NM_026482.2
GCAGCGTGAGTAGGGAGCCCCGGCTGGTGGACGCCGAGTCTCTGggctccgccgccgccgcctccttcCCGAGGTGCAGCCGCACCTCCGCGTGGCGCCCCGAACCCAGCGAGCCGGCTGCGGGCACGTCCCGCGACCCCTCGCCGCCATCCCCCGGACCCACCCGCCTAGCTTTCCTTGATTCTTCCCCTCGGAAAAAATGGTTCCCGCTGCGGGCGAGATGTATACATCTCAAGATTGAGAGGAAGAAACAAGTCATGGGCCAGTGGTCAAGATACTTCTCTGGGAATTGTTGCTGCTGATACTGCTCTTCAGAGTCCTACAATGAGTGTGTGGTTTAAGGaagattttcatatttaaaagatTTTCAGCTTGGAAATCTACATCAAGTGAAAATTTCATTCTTCTGGGAAACATTTTCCTCCTAATAAATTATCCTTGTGATGGGCGACATGGCCAACAACTCAGTTGCGTATAGCGGTGTGAAGAACTCTTTGAAAGAAGCTAACCATGATGGAGACTTTGGAATTACGCTTACAGAGCTGCGAGCTCTCATGGAGCTCAGATCCACGGATGCATTACGGAAAATACAGGAGAGCTATGGAGATGTCTATGGCATTTGCACCAAGTTGAAAACATCTCCCAATGAAGGTTTAAGTGGAAATCCTGCAGATTTAGAAAGAAGAGAAGCAGTGTTTGGAAAGAACTTTATACCTCCTAAGAAGCCAAAAACCTTTCTTCAGTTAGTCTGGGAAGCATTACAAGATGTCACTTTAATTATACTAGAAATTGCAGCCATAGTATCATTGGGCCTTTCTTTTTATCAACCTCCGGAAGGGGATAATGCACTTTGTGGAGAAGTTTCTGTTGGGGAAGAAGAAGGTGAAGGAGAAACGGGGTGGATTGAAGGAGCTGCGATCCTCTTGTcggtggtgtgtgtggtgttggtGACGGCTTTCAACGACTGGAGCAAGGAGAAGCAGTTCCGAGGCCTGCAGAGTCGAATTGAGCAGGAACAGAAGTTCACCGTCATCAGGGGTGGGCAGGTCATCCAGATACCTGTAGCTGACATTACTGTTGGAGACATTGCCCAAGTGAAGTACGGTGACCTTCTTCCAGCTGATGGCATACTGATTCAAGGCAATGACCTGAAGATTGATGAGAGCTCATTGACTGGTGAATCTGATCATGTTAAGAAGTCTCTAGATAAGGATCCCTTACTTCTTTCAGGTACTCATGTGATGGAAGGTTCTGGAAGAATGGTGGTCACTGCTGTAGGTGTGAATTCTCAAACAGGAATCATCTTCACCTTACTTGGAGCTGGGggtgaagaagaggaaaagaaagatgagaagaagaaggaaaagaaaaATAAGAAACAAGATGGAGCTATTGAGAATCGCAACAAAGCAAAAGCCCAGGACGGCGCGGCCATGGAGATGCAACCTCTGAAGAGTGAAGAAGGAGGGGACGGTGAtgagaaagacaagaagaaagcaaatctgccaaaaaaggaaaaatccGTGTTACAGGGGAAACTCACAAAGCTGGCTGTTCAGATTGGCAAAGCAGGTCTGCTGATGTCTGCCATCACAGTTATCATCCTAGTGTTGTATTTTGTGATCGATACCTTCTGGGTTCAGAAAAGACCATGGCTTGCAGAGTGCACACCGATCTACATCCAGTACTTCGTGAAGTTCTTCATTATTGGAGTCACAGTTCTAGTGGTCGCCGTGCCGGAAGGTCTTCCGCTGGCAGTCACCATCTCACTGGCTTACTCAGTCAAGAAAATGATGAAGGATAATAACTTAGTGAGACATCTGGATGCTTGTGAGACCATGGGGAATGCTACAGCTATCTGTTCAGATAAAACAGGAACCCTGACGATGAACAGGATGACGGTTGTTCAAGCTTACATAAATGAAAAGCATTATAAAAAGGTTCCGGAACCAGAAGCCATCCCACCAAATATCCTGTCCTACCTGGTAACGGGGATTTCTGTGAATTGTGCTTATACGTCAAAAATATTGCCACCGGAGAAAGAGGGTGGATTACCCCGCCATGTGGGTAACAAAACAGAGTGTGCCTTGTTGGGGTTTCTCTTGGATTTAAAACGGGATTATCAAGATGTTAGAAATGAAATACCAGAGGAAGCACTGTACAAAGTCTATACCTTCAATTCTGTTAGGAAGTCCATGAGCACAGTCCTGAAAAACTCAGATGGAAGTTTCCGCATCTTTAGCAAGGGTGCCTCCGAGATCATTCTGAAAAAGTGTTTCAAAATCCTGAGTGCTAATGGCGAGGCAAAAGTATTCCGACCCAGAGACCGCGATGACATTGTGAAAACTGTGATCGAGCCCATGGCATCAGAAGGCCTGAGGACCATATGCCTAGCGTTCAGAGACTTCCCAGCGGGGGAGCCAGAACCAGAGTGGGATAATGAGAATGATGTCGTCACCGGCCTTACGTGTATCGCGGTTGTGGGGATTGAAGATCCTGTGAGGCCTGAGGTACCAGAGGCAATAAAGAAATGTCAGAGGGCTGGAATTACTGTGCGCATGGTCACTGGTGATAATATTAACACTGCTCGGGCCATTGCTACCAAATGTGGTATTTTACACCCAGGGGAAGATTTCCTATGCTTAGAAGGTAAAGATTTTAACCGAAGAATAcgaaatgaaaaaggagagATTGAACAAGAAAGGATAGACAAGATTTGGCCAAAGCTTCGAGTACTTGCAAGATCATCTCCCACTGACAAACATACACTGGTGAAAGGTATAATTGACAGCACAGTCTCAGAGCAACGACAGGTTGTAGCTGTAACGGGTGATGGTACAAATGACGGGCCTGCACTGAAGAAAGCAGACGTTGGCTTTGCAATGGGCATTGCTGGAACTGATGTGGCTAAAGAAGCGTCTGATATTATTCTCACAGATGACAACTTTACAAGCATTGTCAAAGCAGTTATGTGGGGACGAAATGTCTATGACAGCATCTCAAAATTCCTTCAGTTCCAGCTTACTGTTAATGTAGTAGCAGTGATTGTTGCTTTCACGGGCGCTTGTATTACTCAAGACTCGCCACTTAAGGCGGTGCAGATGCTCTGGGTAAACCTCATCATGGACACGCTGGCTTCCCTGGCTCTGGCTACGGAACCACCCACCGAGTCACTCCTGCTTCGGAAGCCTTATGGTAGAAATAAGCCTCTCATCTCACGCACGATGATGAAGAACATCTTGGGCCATGCATTCTATCAGCTCGTAGTGGTCTTTACACTCTTATTTGCTGGAGAAAAGTTTTTTGATATCGACAGCGGGAGGAATGCGCCTCTGCACGCTCCCCCGTCAGAACATTACACCATCGTGTTCAATACCTTTGTGCTGATGCAGCTCTTCAATGAAATAAACGCCCGGAAAATTCACGGGGAAAGAAATGTGTTTGAAGGAATCTTCAATAACGCCATCTTCTGCACCATTGTCCTGGGCACCTTTGTGGTGCAGATAATAATTGTGCAGTTTGGCGGGAAGCCTTTCAGCTGCTCAGAACTTTCAATAGAGCAATGGCTGTGGTCGATATTCCTGGGAATGGGGACCTTACTCTGGGGCCAGCTTATTTCAACCATTCCAACCAGCCGCTTAAAGTTTCTAAAAGAAGCTGGTCATGGAACCCAGAAGGAGGAGATACCTGAGGAGGAATTAGCAGAGGATGTTGAAGAGATTGACCATGCCGAAAGGGAGTTGCGGCGTGGCCAGATCTTGTGGTTTAGAGGCCTGAACAGAATCCAAACACAGATCCGAGTGGTGAATGCATTTCGTAGTTCTTTATACGAAGGGTTAGAGAAGCCAGAATCAAGAAGTTCAATCCACAACTTTATGACACACCCTGAGTTTAGGATAGAAGATTCAGAGCCGCACATCCCCCTTATTGATGACACTGATGCTGAAGACGACGCCCCAACAAAACGCAACTCCAGCCCTCCGCCCTCtcctaacaaaaataacaatgcTGTTGACAGCGGAATTCACCTTACAATAGAAATGAACAAGTCTGCTACCTCTTCATCCCCAGGAAGCCCACTACATAGTTTGGAAACATCACTCTGATTGTAAGATGAATGGTAACACACTAGCTGCATTGTAAAGAAACAAATCGAAACTGAGTCTTTTCACATATTGTGACGGACAAGATAGTATTCTTGTCTCTGGACTTCAACAGAAGACACACTTGTACGaatgtagatttatttttttaaaaaaaacaaaagcaaagctttCTGCCAGACTGAGGGTGCTTTTTTGGGGTGTGGGAGAAACGAACTGACAGATGAACAGCGGTGACTCGGCAGGAGTGGCCTGTGGGTCGTCAGTGGTACCTAACGTTGTCCTGACTAGCAGAGCTGTGGTTTATCTCAGTTcttgatgggagggagggaggagtgacGCTGGGTGAGACAGAGAGCCCTGGATCATTGAGTGAATACTTTAATTTCTGCTGTTGGCTGTTAATAATTTGgattatttatgtttataaatgATACAGATCTGTTTACAAGGTTTGTAGATACTTTTTTTGTTCTTCATAGACGGGAAGCTTCCTTATAGTAATGCAGAGAAAAATTAGTCCTTCAAATACTGCtgtattttcaggaaaaaaaaggggggggtgttTCTATTGAAACTGTACTAAATTTTTGCCTACAATTTATCTTGTTACATATGTAGATAAATTGCTAATACTAATAGCCAAATAGATAACACTAAtgctttgtttaaaaaacaaaaaagaaaaaagaaaacaagacaaaaaaaaaaacaacaaaaaccatgagCAGTGGTGTTCTAATGAAGTTATGGCATCTGTCCTAATTAGTTTCTTAAATACATTTACTACTTAATGGTTTTGAAAGaactgtttaatttttaaattttttgaaaactTGCTAATAACCTTTTGTTCAGAATTTAGTAGATTGTTTATTGCGGGACATCAAATACACAATGAAAGATGCTTGAAATGCCTTTGTTATTTCAGGCCAATCAAATTAAACTATCAAAGTACAAGAGAAacctttagtctttttttttttttgtttttgtctaaatATGTTAGTTCAGTGATGTCTTAGTGAACTGTGAGTGACTGCATTGATTTTTCTAATAACTGCGTAGAGACCTTCACACAGCATAGAGGGGGCTGTTGGCATTTTGAGAAAGGTTAATAGAGAGAGGCATACAtcgtttccttttgtttttgaaacttgtttgtaaacataaataaatatgcccttttattaaataaatacacagcAATGGTTCTTCAGACAGCTCAGCTCCTTGGTTCTCTACGTGTGCCGCATTGGCCTGTCTCCTCTAACCACAACTAGAATAAATTTCAAGCTGGTGGCAGCCTCAGGAAGGGCTGTTTGAATCCTTTCTTGGTCACCCCATGGAGTCGAGCTGAGACAGCAGTTTTGCCACCTAGCACACCCTTCATAGAATCTACTTTTATCTAAAGTAAAGTAGTCTCGCCATTTTATACGAAGTAATGACCACAGTTGTCtgatgtatttgttttttattaagtgTCCCAGTCACAGATTAGATTAAAGGGATGGCGCATGAAGATTTGAGGAAGCGGCTAAACACGATCTCTGTAATAACCAACTCTATGCCGAACTCTATGCTCATCTCTGAGACAATTGAATTTCCAGgctctctgcttcttttctgtCTACCTTCTTCCTTTGTCTGCCTCTCGTCTTGACCTTTTAGAAAGTGGTATTGTTTCAGGGCGCAGATCTCGCCAGTTAAACAATCCTCAGGCTGACCTAAAGTTTACGAGGACTACTACATCCAAGAATGCTGACCTAGCAAAGAAACATCTAGTTGATGgtgcttgatatatatatatattttttttttgggcGGGTGGGAGGAATCTTTTTCTCCCCATCAGTTGCCTGCAGTAACTCTCTGCAAGTCTTAGAAACACATCGGCTCTGTCCCATCGATCACTGTACATTTTTACTCATCAGGTGTTTGTAGTTATTCATACTGTAAAAAGAGGTAGCATGATATGCTGGGACGCATATTTAGACCAGGAGCCCAAGGTGGACTCCTCGTCTTGAATTTGCCATTAACGTGCTGCATGATCTTGGGGCAGTGACTCACCCTGACGGAGGGTGGGGGACTCCTCTTGAAGAACCCTTTCAACTCTAAGAATTGACCCTATCCACTGAAGAAGCCTGTGAGGCATAGGGAATAGAGAAAGGGAAATGTtctcagctttcttttttattttggttatGCTTAAATATGAATGTAATTACCAAGAGAATGAGACCTGCATGTGCTCTGGAGGGTTTGTGTCTAGCTTttccggttttttttttttttttccaaaactcaAGGCAATGGCTTTTTACCCCACCTCTAAATCCATAAGTGGGTCTTAGGACATCCGTGAAGTCATAATAGCAAAACACGCTCGGTGTGCGTTTCTCTCTTTGAGACACTGTAATTTCTACCAGAAATGTCCACAGCATTAtgtaagtaggaaaaaaaaaaaaaaatacaagcaagCTGTTAAAGATCTTGGATCCCATTCTATAGTGTGTATACCTAAATCAACATCTGtaattcacatttttctcttttattctctaaccaaaatcagaaagaaaaaaaaaacttgtttaatTTTGCATCCCAAATGTTTTtaatctttgtatattttttagaCTCCCTTTTCTCCCCATCATTGCCTTTCCGTGGTTGTAAATAGTTGTCACACTCTGAGGATGAGTTACGTCTTGTCATCTTACAAATATGTGATATGGTAATTTTCATAACAGATTATCAGTTTTGAACCAAGAAAATGGTGATTTgtttataagagaaaaaaaaacaaaacaacaaaaaaaaccacctgGCTTCATTTCTGTGAAATTGCTCTTTGAAACTTTCATTTCCACGTGTAAGCCAACTGGGATACTACCGTGATGGTGTTGATTTCTTTTAATGATGCTTACCATctcttttagccactgagcctttTATTATTTGTCTATTTGTAAAGTTTATTTGTCTTAACTCATTTAATAAATATACTGTTTATCTGTTTCTGAA

Publications

PMID - Link Title