Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name MAP1LC3BP9
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chrX:24370809-24372266  UCSC
Strand +
Parental Sequence XM_009251028.2
Parental seq. overlap 957 bp
Parental seq. overlap (%) 34.9%
Genomic Region Intragenic (LOC100439203)
Retrocopy Summary MAP1LC3BP9, located on chrX:24370809-24372266, is a retrocopy of the parental gene MAP1LC3B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MAP1LC3B
Full Name N/A
Also known as -
Coordinate chr16:65410716-65423679
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens MAP1LC3BP7
Chimpanzee Pan troglodytes MAP1LC3BP8
Bonobo Pan paniscus MAP1LC3BP8
Gorilla Gorilla gorilla MAP1LC3BP9
Gibbon Nomascus leucogenys MAP1LC3BP7
Green monkey Chlorocebus sabaeus MAP1LC3BP7
Crab-eating macaque Macaca fascicularis MAP1LC3BP6
Rhesus Macaca mulatta MAP1LC3BP7
Baboon Papio anubis MAP1LC3BP4
Golden snub-nosed monkey Rhinopithecus roxellana MAP1LC3BP3
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MAP1LC3BP9
TAGAAGACCTTCAAGCAGCCTGCACCTTAAGACAAAGAGTAGATGTCTCACTTATCAGAGAGCAGCATCCAACCAGAATCCCAGTGATAATAGGATACAAGAGTGAGGAGCAGCTGCCTGTTCTGGATAAAACAAAGTTCCTTGTGCTAGCTAATCAAGCCTTCTTCCTGTTGGTGACTGGGCACAGAATGATGAGCACCACCTCGCTGATTTCAGAGGTGTATGAGGAGTGAAAAGGATGAAGATGGCTTCCTATATATGGTATATGCCTCCCAATAGATTTTGGAAATCGTCACTGTAAAACTAGATAAAAATGCATTTATTCTAGAAGTTTACACCATTACCAAAGAAAAAAAGGAGTGTTACCAACTGAGATGGATCAGTTTATCTAATCACAGATCATCAAAACATAGTGTTCCCACCTAGGAAGTTAGGAAGTTGTTCTTGTATTTAAACAGAAAAACTGAGCTCCAAAAGAACACATTCAGGTCTAGAAACTATATTATTTAACCTAGGCTAGCTTGCTTTCAAATTTTAGAATTTTTAAAATAAAATATTTTGTATTCTAAGTTACCAATAAAATAGATCTTCGAGTTATTTTAATATTGTTTTCCCCCAAATAGGAACTTTCAATTCTAGCAGTAATTTAAAGGTATTCAGAGAGACACGGAGTCTTCTCTTTAGGTTCACAGAACCTGCCACCTTTTTTAGAGGGGTTTTTACTCAACTAGAGAAATCTCTCTAAGAGGATCTTTAAGCATACGTTGTGAAGCATAATCCCTCAAAATGCATATGCCATAGTAGTTGGCACAAGTGCAGGGTAAATGGGGTGTGTAGGAAAACAACTCTAaGAAAACAACTCTGACTGTGAACTGCTGCTCAAGGTTCCTGATTCCTATCAGAAGTACACCAAAAGTCTATGCTCTTGCAAGTGTTAGACAGCTATTTGATTTGTTCTCTGGATAGTTACATACATAAAAACACCACCACTCAATAGGAAACTTTAATAATTCATAATTTTAGTCTAGTTTCTTAGAAGATCCCAGAGAAAAAGAGTGGCATTTCTTCTATTTCAGGTTTTGTCTGATCTAAGTGCTCAAACTGGTGTCTGCGTTGGTAAAGAAACCAGCAGTGTACCAGTGTCATTCT
>XM_009251028.2
ACGGGCGAGCAGCGACCCTGCCTCCCGGAGAGGGCGCGGCCTGCCCTGCGCGCTTCAGCCCGGGTGGCGGCGTCTCGGGCAGCACCACCAAGTCTCTCTCTGGAGGCGAAGGGATGGTCGGGTTTGCCCCATGTCCCTTCCTCTGACCGCTCCCTCAACAGTGCCCCGGGACACCCCGCCTGTGGCTCAGCCTCCCCCGCCCCGCGCTGCCATCTCCTCAGGGCCGGGCAGCAGGCGCCTGAGCTCCCACACCCCCGGGGTGCGGCCCAGCCCACAACCGTCACCTCAAGGACCTCAGGCGCCCAGCGGTGCTGGGCGGGGCTGGGGCACGACCGAGAGCATGCGCAGAGCGCCGGTTTCGCCCATCGCGCACGCGCACACACCTGCCCCGCCCCCACGCTGCGTGCCGCTCCTGGGTTCCGCCACGCCCGTCATGGCGGCGGCCCCGGCCGGCTCTGGCCCCGCCCCTCGGTGACGCGTCGCGAGTCACCTGACCAGGCTGCGGGCTGAGGAGATACAAGGGAAGTCGCTATCGCCAGAGTCGGATTcgccgccgcagccgccgccgccgcccccaggagccgccgggaccctcgcgtcgccgccgccgccgccCAGATCCCCGCACCATGCCGTCGGAGAAGACTTTCAAGCAGCGCCGCACCTTCGAACAAAGAGTAGAAGATGTCCGACTTATTCGAGAGCAGCATCCTACCAAAATCCCGGTGATAATAGAACGATACAAGGGTGAGAAGCAGCTTCCTGTCCTGGATAAAACGAAGTTCCTTGTACCTGACCATGTCAACATGAGTGAGCTCATCAAGATAATTAGAAGGCGCTTACAGCTCAATGCTAATCAGGCCTTCTTCCTGTTGGTGAACGGACACAGCATGGTCAGCGTCTCCACACCAATCTCAGAGGTGTATGAGAGTGAGAAAGATGAAGATGGATTCCTGTACATGGTCTATGCCTCCCAGGAGACATTCGGGATGAAATTGTCAGTGTAAAACTAGAAAAAATGCATCTATTCTAGAATTTTTTAAACCCTTACCAAGGAAAAAAAAGGGATGTTACCAACTGAGATCGATCAGTTCATCTAATCACAGATCATCAGACAGTAGTGTTCCCACCTAGGAGTGTTAGGAAGTTGTGTTTGTGTTTCAAGCAGAAAAACTGAGCTCCAAGTGAGCACATTCAGCTTTGGAAACTATATTATTTAATGCAGGCTAGCTTGTTTTCAAATTTTAAAAGTTTAAAAATAAAATACTTTGCATTCTAAGTTGCCAATAAAATAGACCTTCAAGTTATTTTAATGCTCTTTTCTCACTAATAGGAACTTGTCATTCCAGCAGCAATTTAAAGGCTTTCAGAGAGACCCTGAGTCTTCTCTTCAGGTTCACAGAACCCGCCGCCTTTTTGGGCAGAAATTTTCTACTCAGCTAGAGAGATCTCCCTAAGAGGATCTTTAGGCCTGAGTTGTGAAGCGTAACCCCCGCAAAACGCATGTGCCGTCACAGTTGGCACAAATGCAGGGTAAACGGGCTGTGTAAGAAAACGGCCCTGACTGTAAACTGCTGAAGGTCCCTGACTCCTAACAGAACCACACCCAAAGTCCACACTCTTGCAGGGGTAGACATTTCAGGTTTGGTTTGTTCTCTAGATAGTTACACACATAAAGAACACCACTCAAAAGGAAACTTGAATAATTTATAATTTTGATCTAGTTTCTTAAAAGACCCGGGAGAAAGAGTGGCATTTCTTCTGTTTCAGGTTTTGTCTGAGTTCAAACTAGTGCCTGTGTTGTTACGGAAAGCAGCAGTGTACCAGTGTCATTCTGGAGTACAGCGGGAGAAACCACAAAATAGTGTAACCGAAAACATTAACATTCAGACATACTCCCTTCTGCCTTCTGGCTTAAAGCTGTGGATGATCCACGTTTTTGTTTTTTTAATGTTAAATGTGTAACTCAGTATTACTGAAAAGGTTCCCACATTTTGAATAGTAGCTATCAGTTAGGTCAGACAGCCATCAGAATTCTCCCACACCAAATGCATGTCAGTTGTGGAGAAAACATAGCAAAAAGAGCCGTACACTCTTTACGGATACTAATGTCAAGAGTTAAACCTCCTCAGGTTCAACCTGTGATAAAAGACTAGTGCTTCCCACTACTTGCATGGGGTTCACTATTTATTTACAGTTTTCTTGGGAGTATCACAGGAAAATCACAATTACACCACTTTAGACCCTATGTGTAGCAGGTCACAACTTACCCTTGTGTGTTTAGATGTGTATGAAATACCTGTATATGTTAGTGAAAGCTGTTTACTGTAACGGGGAAAACCAGATTCTTTGCATCTGGGCCCTCTACTGATTGTTAAAAGGAGTTCCTGTCACCTGCTTCCCCAACCCCACCCCCCCGCATGCGTCTGTCCACTTGGCTAACTTTTAATATGTGTATTTTTACATTATGTAAATTCTTAACTGGCCTGTCTTGTTTAGACTGTATACATCATATCTGACATTATTGTAACTACCGTGTGATCAGTAAGATTCCTATAAGAAATACTGCTTTTAAAAAAAAAAAAATAACATGCTGAGGGGTGACCTATATCCCACGTGAGTGGTCACTTTATTTATAGGATCTTTAAAACAAGTACATTTTTAATGAACTAAGTTGAATAAAGGCACAATTAAAAACTGTCA

Publications

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