Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HNRNPH1P3
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chrUn0032). Each line represents a retrocopy.
Species Oryctolagus cuniculus
Coordinates chrX:87968227-87969525  UCSC
Strand -
Parental Sequence XM_017350841.1
Parental seq. overlap 1131 bp
Parental seq. overlap (%) 52.8%
Genomic Region Intergenic
Retrocopy Summary HNRNPH1P3, located on chrX:87968227-87969525, is a retrocopy of the parental gene LOC100341383. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100341383
Full Name N/A
Also known as HNRNPH1
Coordinate chrUn0032:1095852-1105319
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HNRNPH1P7
Chimpanzee Pan troglodytes HNRNPH1P5
Bonobo Pan paniscus HNRNPH1P6
Gorilla Gorilla gorilla HNRNPH1P6
Orangutan Pongo abelii HNRNPH1P6
Gibbon Nomascus leucogenys HNRNPH1P4
Green monkey Chlorocebus sabaeus HNRNPH1P5
Crab-eating macaque Macaca fascicularis HNRNPH1P6
Rhesus Macaca mulatta HNRNPH1P7
Baboon Papio anubis HNRNPH1P6
Golden snub-nosed monkey Rhinopithecus roxellana HNRNPH1P3
Marmoset Callithrix jacchus HNRNPH1P8
Mouse lemur Microcebus murinus HNRNPH1P1
Pig Sus scrofa HNRNPH1P2
Cow Bos taurus HNRNPH1P2
Sheep Ovis aries HNRNPH1P4
Dolphin Tursiops truncatus HNRNPH1P4
Horse Equus caballus HNRNPH1P2
Dog Canis familiaris HNRNPH1P4
Panda Ailuropoda melanoleuca HNRNPH1P1
Cat Felis catus HNRNPH1P4
Pale spear-nosed bat Phyllostomus discolor HNRNPH1P3
Velvety free-tailed bat Molossus molossus HNRNPH1P1
Greater mouse-eared bat Myotis myotis HNRNPH1P4
Kuhl's pipistrelle Pipistrellus kuhlii HNRNPH1P2
Greater horseshoe bat Rhinolophus ferrumequinum HNRNPH1P1
Egyptian rousette Rousettus aegyptiacus HNRNPH1P2
Sloth Choloepus didactylus HNRNPH1P8
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HNRNPH1P3
TTCGTGGTGAAGGTCAGGGGCCTACCCTGGTCCTGCTCAGCTGATGAAGTTATGCGCTTCTTCTCTGATTGCAAAATCCAGAATGGCACATCAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCAAGTGGAGAAGCATTTGTCGAACTTGAATCTGAAGATGAAGTGAAATTGGCTTTGAAGAAGGACAGAGAAACCATGGGACACAGATATGTTGAAGTATTCAAGTCCAACAGTGTTGAAATGGATTGGGTGTTGAAGCATACAGGTCCGAATAGTCCTGATACTGCCAACGATGGCTTCGTCCGGCTTAGAGGACTCCCATTTGGCTGTAGCAAGGAAGAGATTGTGCAGTTCTTTTCAGGGTTGGAAATTGTGCCAAATGGGATGACACTGCCGGTGGACTTTCAGGGGCGGAGCACAGGGGAGGCATTTGTGCAGTTTGCCTCGCAGGAGATAGCTGAAAAGGCCTTAAAGAAACACAAGGAAAGAATAGGACACAGGTACATTGAAATCTTCAAGAGTAGCCGAGCTGAAGTCCGAACCCACTATGATCCCCCTCGGAAGCTCATGGCTATGCAGCGGCCAGGTCCTTATGACAGGCCAGGGGCTGGCAGGGGGTATAATAGCATTGGCAGAGGAGCTGGCTTTGAAAGGATGAGGCGGGGTGCCTATGGTGGAGGCTATGGAGGCTATGATGACTATGGCGGTTATAATGATGGGTATGGCTTTGGCTCTGATAGATTTGGAAGAGACCTCAATTATTGTTTCTCAGGAATGTCTGATCATAGATACGGAGACGGTGGGTCCAGTTTCCAGAGCACTACAGGGCACTGTGTACACATGAGGGGGTTACCTTACAGAGCCACTGAGAATGATATTTATAATTTTTTCTCGCCTCTTAATCCCATGAGAGTCCATATTGAAATTGGACCGGATGGCAGGGTTACTGGTGAGGCCGATGTTGAATTTGCTACTCATGAAGATGCAGTAGCAGCTATGGCAAAAGATAAAGCTAACATGCAACACAGATACGTGGAGCTCTTCTTGAATTCTACCGCAGGGACAAGTGGAGGAGCTTATGATCACAGCTATGTAGAACTCTTTCTGAATTCTACAGCAGGGGCAAGTGGTGGTGCTTACGGCAGCCAAATGATGGGAGGAATGGGCTTATCCAATCAGTCCAGTTACGGGGGTCCTGCTAGCCAGCAGCTGAGTGGCGGGTATGGGGGCGGTTATGGTGGTCAGAGCAGTATGAGTGGATATGACCAGGTTCTGCAGGAAAACTCCAGTGAC
>XM_017350841.1
GCTGCTTGGACGCCGGGATTCGCGAGGAGACGATGATGTTGGGCACCGAGGGCGGAGAGGGATTCGTGGTGAAGGTCCGGGGCTTGCCTTGGTCTTGTTCTGCCGATGAAGTGCAGCGGTTTTTTTCTGACTGCAAAATTCAAAATGGGGCTCAAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCGAGTGGCGAGGCTTTTGTTGAACTTGAATCAGAAGATGAAGTCAAATTGGCCCTGAAAAAAGACAGAGAAACTATGGGACACAGATATGTTGAAGTATTCAAGTCAAACAACGTTGAAATGGATTGGGTGTTGAAGCATACTGGTCCAAATAGTCCTGACACGGCCAATGATGGCTTTGTACGGCTTAGAGGACTCCCCTTTGGATGTAGCAAGGAAGAAATTGTTCAGTTCTTCTCAGGGTTGGAAATCGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCTTCACAGGAAATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATCGAAATCTTTAAGAGCAGTCGAGCTGAAGTTAGAACTCACTATGATCCACCACGAAAGCTTATGGCCATGCAGCGGCCAGGTCCCTATGACAGACCTGGGGCTGGCAGAGGGTATAACAGCATTGGCAGAGGAGCTGGCTTTGAGAGGATGAGGCGTGGTGCCTATGGTGGAGGCTATGGAGGCTATGATGATTATAATGGCTATAATGATGGCTATGGATTTGGGTCAGATAGATTTGGAAGAGACCTCAATTACTGTTTTTCAGGAATGTCTGATCACAGATACGGGGATGGTGGCTCCACTTTCCAGAGCACAACGGGGCACTGTGTACACATGCGGGGATTGCCATACAGAGCCACTGAGAATGACATTTATAATTTTTTCTCACCCCTCAACCCTGTGAGAGTACACATTGAAATTGGTCCTGATGGCAGAGTAACCGGTGAAGCAGATGTTGAGTTTGCAACTCATGAAGATGCTGTGGCAGCTATGTCAAAAGACAAAGCAAATATGCAACACAGATATGTAGAGCTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCATACGAACACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTATGGTAGCCAAATGATGGGAGGCATGGGCTTGTCGAACCAGTCCAGTTATGGTGGCCCAGCCAGCCAGCAGCTGAGTGGAGGTTACGGAGGGGGCTATGGTGGCCAGAGCAGCATGAGTGGATACGACCAAGTTTTACAGGAAAACTCCAGTGATTTTCAATCAAACATTGCATAGGTAGCCAAGGAGCAGTGAGCAGCAGCTACTACAGTAGTGGAAGCCGTGCGTCAGTGGGCGTGAACGGAATGGGAGGGATGACTGGCATGTCCAGTATGAGTGGGGGATGGGGAATGTAATTGGTCCTCATCACTGACTTTTGGTCAACTTTTTTAAAGGAAAAAAAAATACAACTTTGGTTTAACAGTTTCCGCCATATGAGCTTGTGATTTATGCTTACTTTATAAGTGGGAATCAAGATTGTCAGCATAAGGTTCAGTATTTTTGGACATGCGTCATCTGGGATGTAACAGCGGCAAAGTTAACTATATAACTGTTAAACAATTTTCAGCTTTTCTCAAGTTAGTTATATTGTAGGATGTACTTAAACAGTAAGCGTATTTAGGTTAAAGCAGTTGAATTATGTTAAATGTTGCTCTTATACCACATTACATCAAACACTGTTTGGGTGCATGTTGAAAGACATGCTTTTTTGTAAAACAATAGGAGCTGTGTCTACAATTAAAAGTGAAACATTTGGCATGTTTGTTAATTCTAGTTTCATTTAATAACCTGTAAGGCACGTAAGTTTAAGCTTTTTTTTCTAAGTTAACGGGGAAATTTGAGACGCAATACCAATACTTTAGGATTTTGGTCTTGGTGTTTGTATGAAATTCTGAGGCCTTGATTTAAATCTTTCATTGTATTGTGATTTCCTTTTAGGTGTATTGCGCTAAGTGAAACTTGTCAAAAATAAATCTTCCTTTTAAAAACTGCA

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