Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NPM1P11
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr6:102003815-102005746  UCSC
Strand -
Parental Sequence NM_001131605.1
Parental seq. overlap 993 bp
Parental seq. overlap (%) 74.2%
Genomic Region Intergenic
Retrocopy Summary NPM1P11, located on chr6:102003815-102005746, is a retrocopy of the parental gene NPM1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NPM1
Full Name N/A
Also known as -
Coordinate chr5:169077218-169097661
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NPM1P10
Chimpanzee Pan troglodytes NPM1P13
Bonobo Pan paniscus NPM1P12
Gorilla Gorilla gorilla NPM1P12
Green monkey Chlorocebus sabaeus NPM1P21
Crab-eating macaque Macaca fascicularis NPM1P13
Rhesus Macaca mulatta NPM1P13
Baboon Papio anubis NPM1P16
Golden snub-nosed monkey Rhinopithecus roxellana NPM1P11
Mouse lemur Microcebus murinus NPM1P4
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NPM1P11
TGTGATTCCATCCTGTGTGGCTATTCTCTGGGGCAGTGGTCATTTACCTTCCTCTGCCTTATCTCCCACCTAAATGCGTGCTACCAGTTCATGGAAGATTCAATGGACATGTACATGATCCCCCTGAGCACCCAGAACTATCTTTTTGGTTGTGAACTAAAGGCTGACAGATTATCACTTTCACATCAATAATGATGAAAATGAACACCAGTTATCTCTAAGAATGATCACTTTAcTAGAATGGTCAGTTTAGAGACCGGTACCAGGAATGAATTTAATGTTATTGAAACAGGGATAATGAATTATGAAGGCAGCTCAATTAAAGCAACACTGGCAATGTTAAAAAAAATGTCTGTACAGCCAACTGTTTCCCTGGGAGATTTTAAATAGTACTACCCATGGTCTTAGAATTGCAGTGTAGTTCAGACCTTGTGCATATTAGTCGACAGCACTTTTAGGCTGTGGAGGAAGGCTGTGGAGTCAGAAGATGAAGAGGAGGAGGATGTAAAACTATAAAGTATATCTGAAAAGTGATCTGCCCCTGGGAGTGGTAGCAAGTTTCCACAGAGAAAAGTACAACATACAACTGAAGAAAACTCCAGTGAAGAAATCTATATAAGGTACTCCAGCCAAAAATGCACAAAACTCAAACCAGAATGAAAAAGACATAAAATCATTAAAACCAAGATCAAAAGGTAAAGAATCTTTCAAAAAAAAAAAAGGAGGAAAATATTCTTACAATACCAAAAAGACCTAGTCCTATAGAAGACCTTAAAGCAAAAATGTTAGCAATAATAGAAAAAGGTAGTTCTCTTCCCAGAATGAAAACCACATTCATAAATTATATAAAGAATTGCTTCTGTATGACTGATTAGGAGGCTATTCAAGATCTCTGAATAAGGACATCTCTTTAAGAAAATAGTTTATAGTTTAAAGTTTGTTAAAATTTTCCATCTTATTTTATTTTTGTAACAGTTGATGTTTGGCTTTCCTTTTTATAATACAGAGTGGGAACTTTCCCTGCCATGTTTGATAAATATTGCCCATGTTCCATTGCCAAAAATATATTGTCCAAAGTGCCTGTTTAGTTGTTAAGGATGGAACTCTACCCTTTTCTTGGTTTTAAGTATGAATGAAATTAGGGAGGACATAGTTGAAGCAGTGGTCACACATGGAAATGATGGGAAAACAAAAATATACATTTGAAAC
>NM_001131605.1
CCCTGGTGTGATTCCGTCCTGCGCGGCTGTTCTCTGGAGCGGCGTTCTTTTATCTCCGTCCGCCTTCTCTCCTACCTAAGTGCGTGCCGCCACCCGATGGAAGATTCGATGGACATGGACATGAGCCCCCTGAGGCCCCAGAACTATCTTTTCGGTTGTGAACTAAAGGCCGACAAAGATTATCACTTTAAGGTGGATAATGATGAAAATGAGCACCAGTTATCTTTAAGAACGGTCAGTTTAGGGGCTGGTGCAAAGGATGAATTGCACATTGTTGAAGCAGAGGCAATGAATTACGAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAGCCAACGGTTTCCCTTGGGGGCTTTGAAATAACACCACCAGTGGTCTTAAGGTTGAAGTGTGGTTCAGGGCCAGTGCATATTAGTGGACAGCACTTAGTAGCTGTGGAGGAAGATGCAGAGTCAGAAGATGAAGAGGAGGAGGATGTGAAACTCTTAAGTATATCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCAGCtgatgaagatgatgatgatgatgatgatgaagatgatgatgatgaAGAtgatgatgatgatgattttgatgatgaggaagctgaagaAAAAGCGCCAGTGAAGAAATCTATACGAGATACTCCAGCCAAAAATGCACAAAAGTCAAATCAGAATGGAAAAGACTCAAAACCATCATCAACACCAAGATCAAAAGGACAAGAATCCTTCAAAAAACAGGAAAAAACTCCTAAAACACCAAAAGGACCTAGTTCTGTAGAAGACATTAAAGCAAAAATGCAAGCAAGTATAGAAAAAGGTGGTTCTCTTCCCAAAGTGGAAGCCAAGTTCATCAATTATGTGAAGAATTGCTTCCGGATGACTGACCAAGAGGCTATTCAAGATCTCTGGCAGTGGAGGAAGTCTCTTTAAGAAAATAGTTTAAACAATTTGTTAAAAATTTTCCGTCTAATTTCATTTCTGTAACAGTTGATATCTGGCTGTCCTTTTTATAATGCAGAGTGAGAACTTTCCCTACCGTGTTTGATAAATGTTGTCCAGGTTCTATTGCCAAGAATGTGTTGTCCAAAATGCCTGTTTAGTTTTTAAAGATGGAACTCCACCCTTTGCTTGGTTTTAAGTATGTATGGAATGTTATGATAGGACATAGTAGTAGCGGTGGTCAGACATGGAAATGGTGGGGAGACAAAAATATACATGTGAAATAAAACTCAGTATTTTAATAAAGTA

Publications

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