Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SPIN1P4
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Oryctolagus cuniculus
Coordinates chrX:37779857-37780504  UCSC
Strand -
Parental Sequence XM_017342448.1
Parental seq. overlap 547 bp
Parental seq. overlap (%) 11.9%
Genomic Region Intergenic
Retrocopy Summary SPIN1P4, located on chrX:37779857-37780504, is a retrocopy of the parental gene LOC100352123. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100352123
Full Name N/A
Also known as SPIN1
Coordinate chr1:79072370-79147115
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SPIN1P1
Chimpanzee Pan troglodytes SPIN1P1
Bonobo Pan paniscus SPIN1P1
Gorilla Gorilla gorilla SPIN1P1
Orangutan Pongo abelii SPIN1P1
Green monkey Chlorocebus sabaeus SPIN1P1
Crab-eating macaque Macaca fascicularis SPIN1P1
Rhesus Macaca mulatta SPIN1P1
Baboon Papio anubis SPIN1P1
Marmoset Callithrix jacchus SPIN1P1
Mouse lemur Microcebus murinus SPIN1P3
Pig Sus scrofa SPIN1P2
Horse Equus caballus SPIN1P2
Dog Canis familiaris SPIN1P1
Panda Ailuropoda melanoleuca SPIN1P1
Greater mouse-eared bat Myotis myotis SPIN1P3
Egyptian rousette Rousettus aegyptiacus SPIN1P1
Gibbon Nomascus leucogenys Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SPIN1P4
TCCCAGCCTCGAAGGAATATCGTGGGTTGCAGAATTCAGCATGGATGGAAAGATGGAGATGAACCCTTAACACAGTGGAAGGGAACCGTTCTGGATCAGGTACCTGTAAATCCCTCTCTGTATCTTATCAAATATGATGGATTTGACTGTGTTTATGGATTGGAACTTCACAGAGATGAAAGAGTGTCATCACTTGAAGTCCTTCCCAATAGAGTTGCATCATCTAGAATCAGTGACACACACTTAGCAGAAATCATGATTGGCAAAGCAGTGGAACATATTTTTGAGACAGAGGAAGGTTCCAGAAATGAATGGAGGGGGATGGTCTTAGCTCAGGCACCTGTAATGAGCTCATGGTTTTACATTACTTATGAAAAAGACCCTGTATTATATATGTACCAGCTCTTAGATGATTATAAAGATGGTGACCTCCGCGTTCTTCAAGATTCCAGTGATTCTCCTCCAGCAGAGAGGGAGCCAGGAGAAGTTGTAGACAGCCTAGTAGGCAAACAGGTGGAATATGCCAAAGAGGATGGTTCCAAGAGAACGGGCATGGTCATTCATCAAGTGGAAGCAAAACCCTCTGTGTACTTCATCAAATTTGATGATGATTTCCATATCTATGTCTACGATTTGGTAAAAACATCT
>XM_017342448.1
CGCCCCCATCCCCGGTGACCTTGGGGCGCTCGCGGGAGCTggggggctgcggccccggcccccgcgggTGGCGTGGTGGTCGATGGTGCGCCCTCGGCGTCGCAGAGGGTGCTGCTGAGGATCGGCTTGGCGACAAACGTCGTAAGTTTGTTTACGCAGTTGTTTTTTGCGCTGATGCGCCTTTTATGATCTGAGGATTGACTCCGGGTTCAGGAGAGGGTTTTCCGTACATGTAGGAGtgttgctgctgctgctgctgctgctgctgcGGGTGGCTGGGCCGCTCTGGCGTGTCCAGCAAAAAAGCACGAGGCACGTCGAGGTGTGGAACAGGATTCCAGTGTGGAGCGCGTGCCTTGTGCCGGAGACGACACTCGTGCCAAAATGCGAAGACCTGTGTGACTTTTCTTCTGTTCGAATTTTCTAGAAGAAAACGCTGTGCGCTCTGGAAAGGATTGAAGAAGGCCATGCTGGAGTGTCTGCCAACATGATGAAGAAGCGGACGTCCCACAAAAAACACCGGAGCAGTGTGGGGCCCAGCAAACCTGTTTCCCAGCCCCGGCGGAACATCGTAGGATGCAGGATTCAGCATGGGTGGAAAGAGGGGAATGGCCCTGTCACCCAGTGGAAAGGAACCGTCCTGGACCAGGTGCCTGTAAATCCTTCTTTGTATCTTATAAAATACGATGGATTTGACTGTGTTTATGGACTAGAACTTAATAAAGATGAGAGAGTTTCTGCACTTGAAGTCCTCCCCGATAGAGTTGCAACATCTCGAATCAGCGATGCACACTTAGCAGACACAATGATTGGCAAAGCAGTGGAGCATATGTTTGAGACCGAGGACGGCTCTAAGGATGAGTGGAGGGGGATGGTCTTAGCACGGGCGCCTGTCATGAACACGTGGTTTTACATCACCTATGAGAAAGACCCTGTGCTGTACATGTACCAGCTCCTAGATGATTACAAAGAAGGCGACCTTCGCATCATGCCTGATTCTAATGATTCACCTCCAGCAGAAAGGGAACCAGGAGAAGTTGTGGACAGCCTGGTAGGCAAACAAGTGGAATATGCCAAAGAAGATGGCTCAAAAAGGACTGGCATGGTCATCCATCAAGTAGAAGCCAAACCATCTGTCTATTTCATCAAGTTTGATGATGATTTCCATATTTATGTCTACGATTTGGTGAAAACATCCTAGATGTCATCATGAACTTTGCCAAATTTGTGGAACTATTAAATGTATAATTTGTAGACATAAAGACTTGATTGCTTTCCGGTTTAATGAAAGCTTAAATGTCCCTGCGAACCCACAATCTCTGCCAGCAGAACTGGTTTTGTTCTGGATAGTACAGATTGTTGTGAACACAAAGCATTTTGTGTAAAGAGAACTCCTCCCTCTTAGAAGCAGTCTGTGTGGAGAGGAGTTACGGGCAAGTTTGGTAAAAGTTAAGCTAGCATCATAGTCATTTAAACCCATAATTGATCTCCGTCATTTCCTCTTCACTATAACACTCTCTCTGCTGCCACAATGCAAGTATAGTTTGGTATTTTTGTTATTGCCTTTTTTTGAGatatatgtatctatacctacctgtctatatcttatatctgtgtgcatacgtatataatatatatacacacacaGAGAGAGATACAAGTGTACACACACACCATTGGCAGTCCTTTCTCTGTGGATTGGGATGGGGGTGACATAATTTTCTCCAGTTTAACAGGAGTGCTTAACCCAAGTCAGTCATATTTATGATATTACTGTTCTTTATTTAAAATTAAATTTGGGTACAGGAAGCACATAAGAACATTCAGCTTATTTTGAAAGTCAGAAGTTCAGAGCACCTTTTCAATCTGGAGACTTGAAAACAGTAAGTCCAAAGAGGAGCTATATGTGAACAGTTAATGACCCACCTTAGAATTTCACAAACTGGTGAGAAATCTAGGTAAAAGGCTGCCCTTGATTCTAAACTTTGTAAATTTTTTGTTTACATTTTAATTCTAAATGCTTTTAGGAAAACCCAGGTCCTTGGTTCATACAGCATTATTACCATATAGGTGTGTTTTGGACAGCACATTTGGTCCATTATTTGTACAAATCAGGAATTTGGATTTTAGTTGGTAGATTTGAAAGGCAACATCCATTGGTGGCTTGTGTGCACGTGGTAAGTTCATGGGAGAACACAGTGCTTTTATATTAGAAATGTAAGTTTTAAAAATGGAGTTGCCTTCTAATAAGTTCTCTGAGACTTTTTAATTTTTGTCACTATTATTGCTCATATGATTATGGTCAGAGGCCTCTTTCCCTTTGCCCCTTACTCTTCCTCATGAAGAATGTTGGACAAATAACAGCTTAATCTTAACACTTATTGCGGTGGTGTAGTTTTTGCTCCAGGTGTGCTATTTCTGTGGATCTGTTCCCTTTCTTGACCCCAAAGGATTGCAGAGCAGGTATGTTTCACCTTAGAAGGACCATTCATCACATTTGCTGGGTATGTGAAAGCAGCCCTTAACTAGAGTTCTTTTGTGGTTTGTCCCTACAAGGTCATTTAAGTTGAAATAGAACTGCAACTGTGGTTGGTTCACCAGTTGAATGGCTGGTCACTTTGTTCTGGAGGAACCCTGGTGGTTTCACAGCCAGGAGAAGGGCCAATTGTGAAACCAGTCTCATTTGGAGATTGTGAATCTTGCTGCAATTTGGGCAGAATCTGAGGGTGCATGCTGTCAGTCAAACCCAAGGTTTGAGTCAGTCTGCACGACCTCTGTTGTGGCCATTCCTGTTAAGAGATGGTGTGATTTCAAGGCCTCGCTGTGCATGGTTTCCTTGATGCCTGTTTTAACCTTCCTGAAGGCTTCTGCCTGGTGCTGTTGGATGGAAACCACTGCTCCCCTTCCTGTAGTCAGTGCCTCAGTCCCTGTCAGCAACCAATCCCTGTACGCAGGGCTCCACCACAGGCAGCCAGGGCCAAACTTCTCAAAGCAGCGTGATCCCCAAGTCATAGATGCTTCTTGTGTGTGAATAGTGTCGTTCTACAGCTCTGCTTTGTGTTTTCCTGTGACTCTTAGGAGTCCTGTGTGTCAGTCTCCAAGCTGAGCCTGGCTCCTAGAGCCCACATTGATACGTGTCGCATCAGAGTCACAAGTGTGAACAGCACGCATGCAGGCGGGGTGCAGACCAGGCCATGGTGACTTTGGGCTGGAAAATGAATTTTCACTGTGAAGCATCCTGAGGGTTGGGTCAGTTGAAACATTTCTAGCATTACCTGATGACTTGCATTGTGGTTTTTCTGCAAGTAACTTTAGTGACTTTAATACACCCATGATTTCCCAGTCTCCAGAAGAATGCAAAGGACAGTGAGAACATCGATGATGACGATTATGTTTAAATCATTGTTCTGTTGATTGCCTTTAAGGCTGAGGGAAGGGGAAGGGTTTTTGTTATTTTTCCATTTCCCCCCATTTTTTCCTTATTTCGGTGGCTTGCCACCACACCTAATGACGCTGTGACTGATTCTGCTCCCAAGCCCGTGTATCTTGGGCTTCGTTTTAGGCTCATGTTTCGGATCTGCATGCATTGCTTGCATTTTTCTGGTATCTGAATGTTGGTTCCTTGTTCTAGGAATTCAACATTAATTTCCAAAATTATCATGGGACTTGTGACAACACAAGACATGAAGCTATGTATAAAATTTATTGGCCTTTCTCATTTACCTGCTCTAGTATTATTGTATtgtgtgtgtgtgtgtgcgtgtgtgtgATGTCAGGCTGCCATGTAAAACTTCAGAGAAAAATCTTGAAAGACCATCCTTTTTTGCATGCTCTATTCTAAGTAGGATGTTCAATGTAACTAACTAAAATTGCATGGTGACGATACTTAGGTTTTTTGTTTTCTTTCTTTTTGTTTTCTTTCAGTTTCCTGTATATTTGCTTACTGTGCTGTTGTAGTGGTCGTAGGATAAAAATGCACTGGTGAAGCAAGTGTCGTGCCAACCGAGGTGACTTTCCAGTTGTGTGTGTCATGCAGCATTTGAAGGGACTGTGCATTCTTGAAAATCACGGTTACTTCTCAACCAGATTTCTTTTCTTTTCTTGTTTTATGTGCCAAACCCCGAAGTGCATTGGGATTGAATCTCTGAACACTATAGACCCATGAGAAGACTGTTCTGATTGTCACAAATTGTAGTGCCTGAAAACATTCTTAAGCTGATTGTCTTAAAAAAAAAAAGGCTCCAAAGACAAAACAGGAACAATTATAACAAAATAATTATGGTCAAAACGTCTGTGGTTCCTTGGAAATGCTGCGCTCTTTGTATTTGCCACCATTAGTGCAGTGGAATGAATGTGCATAGGTCAGAGGTCTTCGTGTTCACATTTTAAAATTAGGTAATGACCTCATCTTTTGAGCTTGAATTCATTTTTTAATTTTGATTTTATTTTATACAATGTGTAGACAGTCCCCTGTTCTCTGCATTTAGAAGTATACACAATATAAATCTGTTAATTCTGTAAGTAATTTTTATAATTATGATGTAACTCTATCCTATCCTTAAAACATTTAAAAATAAACCCTTTATGTGCAA

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