Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100521680P1
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Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Sus scrofa
Coordinates chr4:99187276-99187665  UCSC
Strand -
Parental Sequence XM_003131194.4
Parental seq. overlap 314 bp
Parental seq. overlap (%) 15.9%
Genomic Region Intergenic
Retrocopy Summary LOC100521680P1, located on chr4:99187276-99187665, is a retrocopy of the parental gene H3-3B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name H3-3B
Full Name H3.3 histone B
Also known as H3F3B
Coordinate chr12:5632326-5634977
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Orangutan Pongo abelii H3F3BP1
Rhesus Macaca mulatta LOC704104P1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104677083P14
Cow Bos taurus H3F3BP1
Dolphin Tursiops truncatus LOC117309382P2
Horse Equus caballus LOC100054462P1
Cat Felis catus LOC105260540P3
Pale spear-nosed bat Phyllostomus discolor H3F3BP6
Velvety free-tailed bat Molossus molossus H3F3BP4
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100521680P1
ATGGCCCGTACTAAGCAGACTGCCCGCAAATCGACCGGGGGCAAGGCCCCGCGGAAGCAGCTGGCCACCAAGGCGGCCCGCAAGAGCGCGCCGGCCACCGGCGGCGTGAAGAAGCCCCACCGCTACCGGCCGGGCACCGTGGCCCTGCGGGAGATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTGATGGCGCTGCAGGAGGCGAGCGAGGCCTACCTGGTGGGGCTGTTTGAAGACACGAACCTGTGTGCCATCCACGCCAAGCGCGTGACCATCATGCCCAAAGACATCCAGCTGGCCCGCCGC
>XM_003131194.4
AAAAGCGGAGGCTTAGGGGGGGCCTGGAGCGCAGAGCGGTTTGGTCGTTCGTTGGAGTTGCTTCTTGCTTTGGTTCGGCGACTGCGGCTCTTCATTGGGCGGCGGGAGCGGCACGGCGGTGGGGGAAGCGGCCTCAGACTTCGCTGTTGGGTAAAAGAAAATGGCCCGAACCAAGCAGACTGCTCGTAAGTCCACGGGTGGGAAAGCGCCCCGCAAACAGCTGGCCACTAAAGCTGCCAGGAAAAGCGCTCCCTCTACCGGCGGGGTGAAAAAACCTCATCGCTACAGGCCCGGGACCGTCGCGCTTCGAGAAATCCGTCGTTACCAAAAGTCCACGGAGCTTCTGATCCGGAAGCTGCCCTTCCAGAGGTTGGTGAGGGAGATCGCCCAGGATTTCAAAACTGACTTGAGGTTCCAGAGCGCCGCCATTGGTGCGCTTCAGGAGGCTAGTGAAGCGTACCTGGTGGGTTTATTTGAAGATACCAATCTGTGTGCCATCCACGCTAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGAGAGAGAGCTTAAGTGAAGGCAGTTTTTATGGTGTTTTGTAGTAAATTCTGTAAAATACTTTGGTTTAATTTGTGACTTTTTTTGTAAGAAATTGTTTATAATATGTTGCATTTGTACTTAAGTCATTCCATCTTTCACTCAGGATGAATGCGAAAAGTGACTGTTCACAGACCTCAGTGATGTGAGCACTGTTGCTCAGGAGTGACAAGTTGCTAATATGCAGAAGGGATGGGTGATATTTCTTGCTTCTCATGATGCATGTTTCTGTATGTTAATGACTTGTTGGGTAGCTATTAAGGTACTAGAATTGATAAATGTGTACAGGGTCCTTTTGCAATAAAACTGGTTATGACTTGATCCAAGTGTTTAACAATTGGGGCTGTTAAGTCTGACCATACATCACTGTGATAGAATGTGGGCTTTTTCAAGGGTGAAGATACAAGTCTTAACCACAGTGTAACTTACAGTTTCCTTaaaaaaaaagaaaaagaaaaaaaagaaGTAAACCTGGCAGCTATAGAATACACTATGTGCATTTATAATAGCTATTTTATATATTGTAGTGTCAACATTTTTAAATTAAATGTTTTACATTCACCTTTGGTGGGGAGTCTTGTCATTAAGATTGTGTGTAATTTAGAGTCCGGTTGGTTTTCTCCTAACTAGACTGCACTTGTTTTCATACCTAGTAAAAATGCTTTGCGCATTATACCTTGCATAAGTCCTCATTCTACCACATGTTAACTACCCTCTAGCTGATAATGCAAACACTAACGGGGGATTTTATTTATAAGGGCTCTAGAATATAATACACGTTATTCACACCAGCATTGTCTGTTACTAATATAGTAGTTAGTACAGCTTTTCTTTGTGTTGTGGTTGGTCTCATAACTAGATTGAGTTTTTCTCTATCAAGAGGGAACAAAACTGAGCTTTTCCATCGAGTTTGTATTATGATAAACCTTTGGGGTAAAGTTGCTGTGGGGAAGGGACACAGCGCCAGCTTATGGAACCTCTGCCAGTTAAAATGGTGTCATCTGGTATAAGGTCCTGGGAAAATCACTTCATAGAGATGGCTTTCCAAGTGGTTTTAAAATTTATCCTTCTATTGAAGTTTTTAGGTCAATTATGTATGTTGACTAAATTTACAAATAAACTTGTTTATCCAACTAAGTGTCAAAAACCTAAATTGTGCAAAATTTTAATACATCTGTTATCTAGGTGCTTTAGTTTATTTCAGGTGTTGCTTGGTAGACAGAACTTTTTATTTTACAGAGGTAATTCTTCAAAGCGTGTAAATAGCCTTGTGCTCTATAAAAATGCCATGACTGCGTATTTGCAGTGTAGGCTTTGCAGTGTATTGTTAATATGCTCCTTCCACTTCCCCATATTGTCAATAAAAATACTTTTATCCAA

Publications

PMID - Link Title
No publications available for this retrocopy