Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ALDH7A1P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Sus scrofa
Coordinates chr1:78189343-78189491  UCSC
Strand +
Parental Sequence XM_013995069.2
Parental seq. overlap 131 bp
Parental seq. overlap (%) 2.9%
Genomic Region Intragenic (LAMA4)
Retrocopy Summary ALDH7A1P1, located on chr1:78189343-78189491, is a retrocopy of the parental gene ALDH7A1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ALDH7A1
Full Name aldehyde dehydrogenase 7 family member A1
Also known as -
Coordinate chr2:129663226-129709728
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Cow Bos taurus ALDH7A1P1
Sheep Ovis aries ALDH7A1P1
Dolphin Tursiops truncatus ALDH7A1P1
Horse Equus caballus ALDH7A1P1
Dog Canis familiaris ALDH7A1P3
Panda Ailuropoda melanoleuca ALDH7A1P1
Cat Felis catus ALDH7A1P1
Pale spear-nosed bat Phyllostomus discolor ALDH7A1P1
Greater horseshoe bat Rhinolophus ferrumequinum ALDH7A1P1
Egyptian rousette Rousettus aegyptiacus ALDH7A1P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ALDH7A1P1
ACTGAGATTGGAGGTGCATTTGGGAGAGAAGAGCACACTGGTGGTGGCAGAGAGTCTGGTAGTGGTGCCTGGAAAGAGTATATGAGAAGAACCACTTGTACCATCAATTACAGTAAAGACCTTCTTCTGGCCCAAGGAATCAAGGTTCA
>XM_013995069.2
ATGGGGGGCGGAGCCCTATTTCTGCAGCTCCTCAGGGCCGCAGGCGTGGTGCTCTTCCCTGGGTCAGTATGTGGCGCGCTTCTGGTCAGCTGTTTGTGCACGTTGCAAGGAAGCGCATTCTTTCAGGACCCTGGGACCGGCCTGCCGCCTTCATGTCTACGCTGCTCATCAATCAGCCCCAGTATGCTTGGCTCAAGGAGCTGGGGCTCCGCGAGGAAAATGAGGGCGTGTATAACGGAAGCTGGGGAGGCCGGGGAGAGGTTATCACCACCTATTGTCCTGCTAACAATGAGCCCATAGCCAGAGTCAGACAGGCCAGCGCGGCTGACTATGAAGAAACTGTAAAGAAAGCAAGAGAAGCTTGGAGGATCTGGGCAGATATTCCTGCTCCAAAGCGAGGAGAAATAGTGAGACAGATCGGTGATGCCTTGCGGGAGAAGATCCAAGTACTAGGAAGCCTGGTGTCTTTGGAGATGGGGAAAATCTTGGTGGAAGGTGTGGGAGAAGTTCAAGAGTACGTGGATATTTGTGACTATGCTGTTGGCTTGTCTCGGATGATCGGGGGACCCATCCTGCCTTCTGAAAGACCTGGCCACGCGCTCATCGAGCAGTGGAATCCCGTAGGCCTGGTCGGAATCATCACTGCATTCAACTTCCCCGTGGCAGTGTACGGCTGGAACAACGCCATCGCCATGATCTGCGGGAATGCCTGCCTTTGGAAAGGCGCTCCAACAACTTCACTCATTAGTGTAGCCGTCACAAAGATAATAGCCAAGGTTCTGGAAGACAACAAGCTGCCTGGTGCTATTTGTTCCTTGACTTGCGGTGGAGCGGATATTGGCACAGCAATGGCCAAAGATGAGCAGGTGAACCTGCTGTCCTTCACCGGAAGCACTCAGGTGGGAAAACAAGTGGCCCTTATGGTACAGGAGAGGTTTGGGAGAAGTTTATTAGAACTTGGAGGAAACAATGCCATTATAGCTTTCGAGGATGCGGACCTCAGCTTAGTCGTTCCCTCAGCTCTCTTTGCGGCCGTGGGGACAGCCGGCCAGAGGTGTACCACCGCGAGGCGCCTGTTTTTACATGAAAGCATCCACGATGAAGTCGTTAATAGACTTACAAAGGCCTATGCTCAGATCCGTGTTGGGAACCCATGGGATGCTAATGTTCTCTATGGGCCACTCCACACCAAACAGGCAGTGAGCATGTTTCTTGGAGCAGTGGAGGAAGCAAAGAAGGAAGGTGGCACAGTGGTCTATGGTGGCAAGGTTATGGATCGCCCTGGAAATTATGTAGAACCGACAATTGTAACAGGTCTTGACCACAGTGCATCCATTGTACACACAGAGACATTTGCCCCAATTCTCTATGTCTTTAAATTCAAGAATGAAGACGAGGTCTTTGCATGGAATAATGAAGTAAAACAGGGACTTTCAAGTAGCATCTTTACCAAGGATTTGGGCAGAATCTTCCGCTGGCTTGGACCAAAAGGATCCGACTGTGGCATCGTAAACGTCAACATTCCAACGAGTGGGGCTGAGATTGGAGGTGCCTTTGGAGGAGAAAAGCACACTGGCGGCGGCAGGGAGTCTGGCAGTGATGCCTGGAAACAGTACATGAGAAGATCTACTTGTACCATCAACTACAGTAAGGACCTTCCTCTGGCCCAAGGAATCAAGTTTCAGTAAAAGTGCTTTATGCCGACCTTTCAAGTCTTTCAGGCATTGTTGCAACTCTTCTGAAGAAGAAGGCAATGAAAGTTAAGAAGTGCCTTGAATAAATGCATCATTTTGAATGTGACAGTGCCTCCAAGGCCCTAATCAAGAGACTTTTTTTTTTTTAATAAAAATTAGCATGACAGCCTTATTTAGTGAAAGAGTAGATGAATTTTTATGTTACTAGTAGTTACCAATTTTTTTTTAAGTTTAGGATTATTTTATAATTTAGAAGAAATAATACTTGCCATGGTAGGAATTTGGAAAAATACAGACCTTAATAAGGAAGAAAATAGAAGTCTTGTCAGTGGATGCAGGAACATCTCCTGAGCGGGTAAAGAAATCTGCATGTATTGATTCAGGTCGCCCTCAGCAGGTGTCAAGAAGGTGTGATTGCAGAGGGGTGTGCCCCCTGCTGGTGGAGGAGCACAGCACAGCAGCCCTGTGCAGTGACACCAAGGGCATTCAGCACCATCACCGCTTCTTGCTCAGGATAGCTGGTCACCACAGAAGAAATACGTAGTGTGGACAGACATTTCACTCCTGCCCTAGAACCTGGAACTGCTGACGACATGGAATTCCATGCAAAGTGCATCTGGATTTCTTATGCAACCTCTGACCGTTTTCTGTAGCTGTCAGACTTCTGGGATTGCCCTTAGGTTTGTTCTAGGAGAATAACTACGTGTGGCAGCACGTGTTGGCGCTGAACTCAGCACAGCTCACTTTCTCTGTGCTCAGAGTCAGCTTCCTTCTCTTGAGAAGCTGCTCAGGAGCCCCTGGAGTCGTTCAGCCTGGGGCCCTTTTGAGCCCACGCTGGCTCCTGTAGTTCTATCTTCCTAGCAGTCTCTGCTTCCCTAATGGGTAGCAGCCAGCACCTCCTTGATTTCTGccagattggattgggcagaagccttcaaagacaatgacatttgtccaggacctaatgtgtcaggatgtatggagagagttagacaactggcagagagtttggagttgagttatggcggagaagcaagcagatgaaaaaaacaaagccattataaatttatcaggaaagcaaGGGTATTGATTACATGTTCCATGGCCCCATGGGGACTAGCATTCACCGAGGTGTGCCTTGTCAGCCTGGAATATTAAGCCAGACGTGGACAATAGGTGTTTGGAAAGCATGTTGGCAGGAAAAATTCAGGGTTTGAGGGTAGGTTAGAAAGGCAGGCAGTTTATATTTGGTAGTGGAAAATCAGTAATGCCTAAAATTACAAAAGCAGGAAATCACAATATAGGCTTAAAAAGAGAGGTATATCCTATCGTTGTTTCTATCAATGAAAAATCATTGTTTCAGGAGAGCAAAAGAGAAAAGATTGCTTTTTTTCCATAACAAGTCTTGTAGAGCTTTTGACTTTATATCAAGAAATTGTGTAACTTTTGATTAAAAATTAAAACCAACAACAACAAAAAAAGTCAGAATCAGATGCTTGTTATCCATTTCATGGTCCTCGCCCACCCTGCCCCAGGTGCATGATGCCACCTCCCTGTTACTGAACAAGGAACCCTTTTTAAATGTCTCATGAAATGATTATGCTGAAACCAACTTCCTTATCTTGAAGTTCAAAGTGGATTACCTCATACTGATACATAATATATGTTttcttttttggcctgtggcatacagaatttctcaggtcagtaattgaactcatgccaaagcagtgacctaagccactggatccttaacctactgtgctgcaagagaactcGTGATACGTAGATACttttctcttttagctgccctgtggcgcatggagttaagatctgagctgtagtagtgacctatgctgtagcttcagcgtgctggatcctttaacctgttgtgttgggccagggatggaacctgcatcccagcactgcagagacgctgctgaccccattgtaccacagtgggaacttcTTAATAATTTtttttctttttttttttttgctttttagggccgcacccatgacatttggaagtcaccaggggtcaactcagctgcagctgctggcctatgccacagccacagcaacaccagatccaagctgagtctgcaacctataccacagctcttggcaacgccgaatccaaaacctactgagcaagaccagggattgaacccacatcctcatggatactagttgggttcattacccctgagctacaacggaaactccCCAAACATTTGAACATAAGCAGTTGCTCAAGAAAATCATGCAGTTTGGGCATTTGCTTAAAAAACCTTACTATGGTTTTTCTTTATAAGTCGCAATGTTAGGTATTGTAGCCCAGTCTTTAGAGTGTGTAATGTGGTCTCAAGAAAATAAAGCCCTATTTAAAATATTTTTGGGAACCATTTACAATTGGCTGTTTTCATTTTGTGAAATAATTGTGTATGATTTTGATGGAAATACTTTTATATCCTGTTTTTTTCCAAGGATACTATTTTTAAACCAGTATTCAGTGTTAAACAGAAGCAGTGTTAATGTTTTAGCTTTAAAATTTTTATGTTTGTGATTTTTCTCCAATTAGGGATATTTAGAGGGGCTCTCCATTCCTGTATACATACTAAAGCCGTGCCATGGTAGCCAATTTGGAATAATAATCTCCAGTATACTGTTGAGAGGGGTACTGCCAGCTCTGACCTTAGGTATAGAAATCAAGTTAAACTGACGCTGAAAGCTTTCCTGTAAACTAATTCACAAATT

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