Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ATP5LP4
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Sus scrofa
Coordinates chr10:30929665-30929893  UCSC
Strand +
Parental Sequence NM_001244137.1
Parental seq. overlap 195 bp
Parental seq. overlap (%) 7.2%
Genomic Region Intergenic
Retrocopy Summary ATP5LP4, located on chr10:30929665-30929893, is a retrocopy of the parental gene ATP5MG. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ATP5MG
Full Name N/A
Also known as ATP5L
Coordinate chr9:45706449-45716541
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Sheep Ovis aries ATP5MGP1
Dolphin Tursiops truncatus ATP5MGP6
Horse Equus caballus ATP5MGP3
Dog Canis familiaris ATP5MGP1
Panda Ailuropoda melanoleuca ATP5MGP5
Cat Felis catus ATP5MGP7
Pale spear-nosed bat Phyllostomus discolor ATP5MGP3
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ATP5LP4
AAGTCATTAGTGCGCAAACTAGTAGCTTCGAATAGCTCATAGTTAAGGAAGCTATGCTGAATGGTTTGATGACCAATGAGGTGTGAATGTGGTTTTCTGTTTGCAAGATCATAGCAAGCATAGCATTATTGGCTAGAGTGTTTGAAAACCAACCTTTAATATCTGATTATATTTGGTTTATTTCAGTGTCCTTGCACCATGTGTGACCAGACTGCTATCTGAATAAAAT
>NM_001244137.1
CCCTGAGCGGCTGCCCCAAGAAATGCCTGTTTCTCTGCGGCAGAAATGTGTTGCTTTTTACCTGCTCTCTGATCTCATCTTCTCATACCCACTTTTCCCTCTTGTGAGTGAAGAAAATAAACTGACCCACTGGATTCCGAAGAGACAGTACACCTAAATATATTGGACAGGCGCAGAAAGAGGAGGCCTGACCTTGGAAGCGGAACGGGGTCCTGCCGCAGGTCCTTCCTGGCGGGTGACATTCAGCCAGCCAGTCGCAGCGACGGACTTTCACTCCTAGAACCATGGCCCAGTTTGTCCGTAACCTCGCGGAGAAGGCACCGGTCTTGGTTAACGCTGCTGTGACTTACTCGAAGCCTCGATTGGCCACATTTTGGCACTATGCCAAGGTGGAGCTGGTTCCTCCAACCCCTGCTGAGATCCCTACAGCTATTCAGAGCCTGAAAAAAATAGTCAATAGTGCTCAAACTGGTAGCTTCAAACAGCTCACAGTTAAGGAAGCTCTGCTGAATGGTTTGGTGGCCACCGAGGTGTTGATGTGGTTTTATGTCGGCGAGATCATAGGCAAGCGTGGCATCATTGGCTATGATGTTTAAAGACCAATCTTTTAACATGTCATTATATTTGGTTTATTATTTCGGTGTTCTTGGACCATGTGTGATCAGACTGGTATTTGAATAAAATAAGACAGCGTGTCAAAATCAGTATTTTCTCTATCAAACACTGTATGGAAGGTCACGATTTTTTTTTTTTTAATTAAAGTATAGTTGATTTACAATGTTGTGCCAATAGGCTACAGTTTCTCTTGATGTTAAATTATGTTCTCTTTTGCTTTAATACATTAATGCAGCTCTAAATGCATGTCTTTGTTTAGTCTGCAATTGGAATATTGCAAGCAACCTGGTAACATTTGATGGTAACATTTGATTTTGAAGGCTTGAAATAAATGATAATTAAGCTTTATTTCTAGAAAAGTTGGGGAAAGACCTTGAGAAAACTAGAACTTGCTCCAGTAGAAGAAATAGTAATACCATGAGCCAAATATGATGAAGTTAAATTATGTAGTATAAAGAATAAAATTTGGACTGTTTTTCTTTGCTAAAATCAGAGAAAGACCCTTTTGACAACACCTGTGTCTGTAAATATAGGGGAACTCTGTCAACTTGAATATAGCCTCCCTAAGAGAGAAGAGCAAGGTGATATTCTGTGTACCTTTGTGACATCTTTAACACTAGGACAGAGTGAATGACAACAACAAtgttttgttttgttttgttttgttttgttttgttttTAGtctttttagggccgcacttgcggcacatggaagttcccaggttaggggttaaacgggagctgtagctgctggcctccgccacagccacagctgtgccagatcctaggcgcatgtgtgacctacaccacagcaacgctggatccttaacccctgcaccacgacgggaacTCCCTTTTTAATCTAATTTTGATATGTGTTATATTCTGTCCAATTTGGTTTTTTTAGGACCTATCTTTGCAAAAATAAAATATCCTATATAGggagttctgctgttgctcagcaggttgtgaacccgactagtatccatgagcatgcaggttcgatccctggcctcactcagtgggttaaggatccggcattgctgtgagctgtggtgtagggtgcagatgatgctcagatcccaagtggctatggctgtggcataggctggcagctgcagctctgattcaataccttaactggaaactgccatataccaagtgtgtggccctaaaaagcccctccccccaaaaaaaaaaTCCTATATAAATTTAACAGGGTTATAATTTAGTATCATCCATGGGTCTAAATAGTGTGTTGTgggagttctctttcggcacagtgggttaaggatccagtgttgtcattgcagcagcttgggctcctaaggccaggttcaatctctggcccagaaacttccacatgctgctggcatcccccccaaaaaacaaAACAAAACAAAACAACAGTATATTATGTCCTGAAATAAATACAGCTCAGTCTGTCATCTTGAGCTATTTTGTTGAGGATTTGAGAACAACTTAATCATTCACTGGCTTTTCCTGGGGTCTTATCATCTGTGAGTGGCTCATTTGTGTGTGTCTAAATCTATTATAACTCTCTTGCAGCCCGTGCACAACATGGAATACCTACGATCTGATGATAACCAAAAGATGATTGCATATTGGAAAAGCATGACTCATGATACAGTATTAATCCTTTAATAGTATTGAACCTTTAACCAGTCAATCCCAAATTCACCAGCAGGTTTAGAACACTGCTGCCTTAGCCAATAAAGGGCACAGCTTTTCTATGTGATTAAGGCAAGAAGTCTCCAAGAGAGACTGTTACCTTCTAAAATACGAAGTTATGCCTAATTTACTGCAGGTGGCCAAAACTGAAACTACTATTTTTCAAAAAGTATTCAGTAACTTAAAATACGCACCCAGAAGACTGAAAAGACACTGCTACAATAATAGTGCTGTTTATGTGTTTCTCTATTGCATACATGAATGAATAGTACTTTTTTTTTTAATTTTAAGCTACAAGATCAGCTAGCACTGGTAAACTTACAGAGGCGTAGTTGATTCCTAATATGTAATATGATTTTATTTTAACCACATAGTCACACCAGAAAGCCCTCAAAATAAACATCTACTACTCACT

Publications

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