Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name EIF3JP1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Sus scrofa
Coordinates chr4:87098443-87098708  UCSC
Strand +
Parental Sequence XM_003121533.6
Parental seq. overlap 216 bp
Parental seq. overlap (%) 11.5%
Genomic Region Intergenic
Retrocopy Summary EIF3JP1, located on chr4:87098443-87098708, is a retrocopy of the parental gene EIF3J. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name EIF3J
Full Name eukaryotic translation initiation factor 3 subunit J
Also known as -
Coordinate chr1:126998613-127019264
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes EIF3JP1
Bonobo Pan paniscus EIF3JP1
Orangutan Pongo abelii EIF3JP1
Crab-eating macaque Macaca fascicularis EIF3JP1
Rhesus Macaca mulatta EIF3JP1
Cow Bos taurus EIF3JP1
Dolphin Tursiops truncatus LOC101336709P1
Horse Equus caballus EIF3JP1
Human Homo sapiens Without Homology
Gorilla Gorilla gorilla Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>EIF3JP1
AGAAGAGTCAGACTTCAAATTAACCAAAGAAGCATTTCATGTTAATAACGGAACTTATAGAATCAATGCTATGAGCCCATTTTCAAGGGATGACTACAAGGATGTTGAAAAGTTACTCAAGGATAAAATTAAACAATGTGAAAAGGCACTATATTATGCAAATTTTTGGAATCCTTAGATAGAGAGGTGTGTTTTTGGAAACTGAAGACTTGAAAAATATTACCAATTCATTAACTGTGCTTTGCAATGACAAACAGGAGCAAGAA
>XM_003121533.6
GCCTGGGCCCCGGCGTTAAGTCAGCCACAGTCCCAGCCTGCCCCGCGCCGGCAAACGAGAGCAGATCCAGTGACTCACTGCCGCGCTAACTCCTCGCTCGCTGTCGCCTCACACACGCTCATACCCGGCGCGAGATggcggcggcggcggcggcagcagcggcgggggACTCCGATTCTTGGGACGCAGACACGTTCTCCGTGGATGACCCAGTGCGGAAGGTGGGGGGCGGCGGCACCGCCGGCGGGGACCGCTGGGAAGGCGAGGACGAGGACGAGGACGTCAAGGATAACTGGgatgatgatgatgatgatgaaaaaaaagaggaagcagaagTAAAACCAGAAGTAAAAATTTCAGAAAAGAAAAAAATAGCAGAGAAGATAAAAGAGAAAGAACGGCAACAGAAGAAAAGGCAAGAAGAAATTAAAAAGAGGTTAGAAGAGCCTGAAGAACCTAAAGTGCTAACTCCAGAAGAACAACTAGCAGATAAACTACGGCTAAAGAAACTACAGGAAGAGTCAGACCTCGAATTAGCAAAAGAAACTTTTGGTGTTAATAATACAATTTATGGAATAGATGCCATGAACCCATCTTCAAGAGATGACTTCACAGAGTTTGGAAAGTTGCTAAAAGATAAAATTACACAATATGAAAAGTCATTATATTATGCCAGTTTTTTGGAAGCCTTAGTTCGAGATGTGTGTATTTCATTGGAAATTGATGACTTGAAAAAGATTACCAATTCATTGACTGTACTCTGCAGTGAAAAACAGAAACAAGAAAAGCAAAGCAAAGCCAAAAAGAAGAAGAAAGGTGTGGTTCCTGGAGGGGGATTAAAGGCCACCATGAAAGATGATCTCGCAGATTATGGTGGTTATGATGGAGGATATGTACAAGACTATGAAGACTTCATGTGACATTTTATCTTCTCCTGGTGTCTTCTTTCTGTTGCCCACAATCCCTTCAACATGTAGCACAACTTCCTTTCCTTTCAGTTCTGCCAAATGCTACAATCAGAAGTGCAGTATCTTTTGTGCTGTTTATTTAACTCCTTGACACTTAGGTGCTAATGTGCAAATGAGGGAACTTGGATCTTGCTGCCAAGGGGTTAAAATTGGGAACCTTCGTTGCTACTAAATCATAGTTTaaaaaaaaaaaacaaaaaaaaaaaCCTAATAATGTTGTCATTGTTGCTATCTGATTCCATAGCAGCAGTCACTAAATTGGAAACAAAGGTTGCAACATGACAAAAAATTGTGTAGTATTTACCAGCACCATTCAGTAATACAGCCTTAACCATACCTCCTTGAACTACTTCATAACTTGTCAAGAAAAGCAGTCTGCAGCAAGGGCATGTGGTATGCACCTAGTATTAAAATTGCTTTGTCTTAAAATTGAGCGTGAGGATATTAAAAATACATTGTGAAGAAGACTGCTTATCTCTGAAGATACGGCGACTGAAAAGCACTAGTTTGATACTTAAAAATTAAAAGACCAAAACCCTCCAACTTTGAAGCTGAAGAAGGTAAACCTCTCCATTACTGCATTGCAAGTTGTGGAATCTCTTGAATGCATAGACTGTCTAGTTTCTATTTATCAGACTATTCTACCAATGGAGTGCTTCAGATGGGGGAGGGGAACTCTACCTGTTTTATCTGCCTGATTTAAGTGTCTGAGAAACAAACCTCTTCTGTTCTCCTAGGCTGCAATGGACAACTTTAACAGGGTTTTGGCATTTCCTTTCCTTTATAAAACATGCTCAGCAAACTGCACCAGTTAATTACAGTTTGGTAAATTGTTATGTTAACAATTATGACATCTGCAATGTTTTATAAAGCAACTAATTTAATAAAGTTACTATTGTAAGGACTTAAA

Publications

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