Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GALNT1P1
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Sus scrofa
Coordinates chr13:91979850-91980408  UCSC
Strand -
Parental Sequence XM_003482057.4
Parental seq. overlap 462 bp
Parental seq. overlap (%) 11.5%
Genomic Region Intergenic
Retrocopy Summary GALNT1P1, located on chr13:91979850-91980408, is a retrocopy of the parental gene GALNT1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GALNT1
Full Name polypeptide N-acetylgalactosaminyltransferase 1
Also known as GalNAc-T1
Coordinate chr6:119295896-119493901
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus GALNT1P1
Golden snub-nosed monkey Rhinopithecus roxellana GALNT1P1
Egyptian rousette Rousettus aegyptiacus GALNT1P2
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GALNT1P1
GAGAACACCTAGAAATTTCCTTTAAGATTGGGTACTGTTGACATACTTTGGAAAGTGGTACTTGCTTACATGTTGGATATGTGCTTTAGAAATCTACACTTTATATTTCTAAGAGGCACAGGGCAGATTATCAGTAAAAATAATAGAAGACTTGCATAGGTTAGATAGATGAAATAAAGAATTGCTTCTATATAATTCACAGATGTTACAAAGGTAGATAATAGAGATATATCAAGACTTGGTCTAAGACACAAACTGCAATGTAAAACTTTCTCTTGTTACCTAGAGAATAGTTACACTGATTCTCAAGTTCTATATCACTATTTCTCTTTGGAAGACATACAAAATATGAAACAAATAAATATCTGAGTAATATAGCTAGAGAAGATAATGAAAAGCTTGGTAATTTTAGCTGTTGTGGTATGGATGCAATCAGATCCTCATACTGCCAGTAAAAAAAATAGAACAGATTACTTTGCTTAGATGTTTCCAAACTTAATGGCTTGATCACAGTGCTCAAATGCCATCACATAAAAGGCAACCAACTTTGGGAGTATGG
>XM_003482057.4
agaaattcttctgtaaccaaggacataaagatatttacctatattttcttttaaagttttagatacttgtatccttaaatctttaatccacctggaactggatatttggatggtgagagGAGATGTGGGACATGTGGATTTGGGATATGAATTCATTTGAAAAGCCACTTTGGGGTTATGAACGTGATTTCTGATGAAACTGGATTGGAATAATTTTCATGATCTTTGtatatttatatatatatatTTTAAAATTTTGCATTTTACTTAAAGTGCCATGAGAAAATTTGCATATTGCAAGGTGGTCCTAGCCACCTCCTTGATTTGGGTACTTTTGGATATGTTCCTGCTGCTGTACTTCAGTGAATGCAACAAATGTGATGAAAAAAAAGAAAGAGGACTTCCTGCTGGGGATGTTCTAGAGCCAGTACAGAAGCCTCATGAAGGTCCTGGAGAAATGGGGAAACCAGTCGTCATTCCTAAAGAGGACCAAGATAAGATGAAAGAGATGTTTAAAATCAATCAGTTCAATTTAATGGCAAGTGAGATGATTGCACTCAACAGATCTTTACCAGATGTTCGATTAGAAGGGTGTAAAACAAAGGTGTATCCAGATAATCTTCCTACAACAAGTGTGGTGATTGTTTTCCACAATGAGGCTTGGAGTACGCTTCTGCGAACTGTCCATAGTGTCATTAATCGCTCACCAAGACACATGCTAGAAGAAATTGTTCTAGTAGATGATGCCAGTGAAAGAGACTTTTTGAAAAGACCTCTAGAGAGTTATGTGAAAAAGTTAAAAGTACCGGTTCATGTAATTCGAATGGAGCAACGTTCTGGATTGATCAGAGCTAGATTAAAAGGAGCTGCTGTGTCTAAAGGTCAAGTGATCACCTTTTTAGACGCTCACTGTGAGTGTACAGTGGGGTGGCTGGAGCCTCTCTTAGCCAGGATCAAACATGACAGGAAGACAGTGGTCTGTCCTATCATTGATGTGATCAGTGATGATACTTTTGAGTACATGGCAGGTTCTGACATGACCTATGGCGGGTTCAACTGGAAGCTCAATTTTCGCTGGTATCCTGTTCCCCAAAGAGAAATGGACAGAAGGAAAGGTGATCGTACTCTTCCCGTCAGAACACCTACAATGGCAGGAGGCCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACATATGATGCTGGAATGGATATTTGGGGAGGAGAAAACCTAGAAATTTCCTTTAGGATTTGGCAGTGTGGAGGGACATTAGAGATTGTTACTTGCTCACATGTTGGACATGTGTTTCGGAAAGCTACACCCTACACGTTTCCAGGAGGCACAGGGCAGATTATCAATAAAAATAACAGACGACTTGCTGAAGTGTGGATGGATGAATTCAAGAATTTCTTCTATATAATTTCTCCAGGTGTTACAAAGGTAGACTATGGAGATATATCATCAAGACTTGGTCTGAGACACAAACTTCAATGCAGACCTTTCTCTTGGTACCTAGAGAATATTTATCCCGATTCTCAGATTCCACGTCATTATTTCTCCTTGGGAGAGATACGAAATGTGGAAACAAATCAGTGTCTAGATAACATGGCTAGAAAAGAGAATGAAAAAGTTGGGATTTTTAACTGTCACGGTATGGGAGGTAATCAGGTATTCTCATACACTGCCAACAAAGAAATTAGAACAGATGACCTTTGCCTGGATGTCTCCAAACTTAATGGCCCAGTCACAATGCTCAAATGCCACCACCTAAAAGGCAACCAACTTTGGGAGTATGACCCAGTGAAGTTAACCCTGCAGCATGTGAACAGTAATCAGTGCCTGGACAAAGCCACAGAAGAGGATAGCCAGGTGCCCAGCATTAGAGACTGCAGTGGAAGCCGGTCCCAGCAGTGGCTTCTTCGAAACGTCACCCTTCCAGAAATATTCTGAGACCAAATTTACAGAAAAAAAAGAAGAAAATTTGGATTGACTGGGCTACCTCAGCATACATTTCTGCCACATTCTTAAATAGCAAAAAAGGAAAGTACTTTCCTCCTGCAGGATGAAGGTTTATCAGCCATTAAAACTTAGACTGCTCTCGCTTTCACTCGCTGTGAACCAGCCTGCCTGTCCAAGGACGTGGAACTACACAGTAGCGAGACTGCACACCGATGTTTACAAGATTGAAAATGTCTTTCATCAAGAATCATTGCAAAGAATACACAGACAGTGAAACAACCTACGAAACGTGCTTTCCGGAGAGCCACACCTTTTATGGTTTGCTTGCACATCAGTACTTTCTGCTGATTGTGCTGGTGTAATGAAGAGACGTCCAAGGTGTTTTTTTCTGATTAGAACTGGTAGCCAGTATATTAAATATTGATGTAATAAATGAAAAAGAACTGGAACCAGATTCAGAATCATGAAAACATTTTTACAACAATTTAAAAAACTATATTAAACAGGGTTTAAAGGAAATTAAAACAGAACTATGAGAAGTACAATTTGTTATAGTATAGTATTAAATTTCTATATAGATTTTATACCTCAGTGGGGAAAAATAACTGATTCCAATGACATTCATTTTGTTTTCATCTGTGATAGTCATGGATGCTTTTTTTTTTTCCTTGGGGTGCTGAAATTGAGCTGAAAAAAAAAAATGGCTCTTTGAACGTAGTTTTAATTGCTTTCTACAATCTTTTTAATTTGGTTTGTGGGCTGCTGGAATTGTAATTTTTAATTGCCTTCAAAAATGGAGATTTAAATAATGTCTGGTCTCACTGAATGAGTTAGATATCTCAGTTGCTCTTGGGTCAACTGGCTTATAGACGTGCTCTCTTTcacacaacacatacacacacacaaacacacaTTTCTTATTAGATTTTCAACTTTATAACTTGGTTCCACTGATTACGCTTAATACCCAAGATTCATACTACTGTACTACAGATTTATTTTCACAGCAATAAATCTTCTGTTGTTTATGATTCCATTCAACAAAAGGCCTACAGAAGTGAATCATTAATTGGTTATTTGGAGATGATACATTTGATGATTTTTTTTTTGGAAAACTTTTTTCACTCCATACTCAGATGTGCTTCATTGTCAAGTGCATATTTAGATTAGGTTCTTGAATTGTAATGTTGATCTGCTGCTTTTTTTTTTTTAATAAAATTTGACTGAAAATGTTTAATTGGCATTTTTTAATGAGTTAGCCAAAGAAGTGCAGCTCTTATTCTACATCATTAGTCCTGCATTTCTTCCCTAAATTCCATTTAGGTTAAATGGACTTTCTTTTTCTGATTTTTTTTAACACCACAAGATAACCTGAGTATTGATTAAAAGTTGAGCATGAATTAATGTTTTAATGTCACAGAAAATCTCATTGTGACATTTTTCCTGATCTGTGGAGAAATCCATTGGCAAAAGTGCATATATTTTCTTGTTTATTTGTAAGATTATATTTAATGATATTCTTTTCTTCATCAAATACTCACTGCAGGCAGTGCTATTTCTGTGCCTAAGAATGTTTCTGAACGTTGCATCATTAATGATACTTGCCAAGTTGAGTGTACAGAAGGTTTCTCATATCCTATTCAAGTTAATATCAAGCACATGTTGATGCTTTAGGGTGAGGCTGTAGTACAGAATACATAAACTTTTCCCCCAGGAAATCTGAGTCAAAGCAGGTGTCAGATGGGATTTTTTTTTCCTACTCCATGAGCTGTGTTAATTCTCTATCTTTGGTAGGTTTAATGCTTGAATAAATCAGGTATCTAATCAATAAATTATTTTCATGCTCAGAATGTCAGGTTTTTGTACTCTAGTGTAGTTTGGTCTTATTCTTTACTGTAAGAAAGCTTAACAGCAATGTGATTCAAGGTTTTGTGTTTCTTAAGAGGGGGGTGTGCGTGACTTAATTCATGGGTACTTTTAGAACCTGATAGATAATCCCACTGCCTTTATTTTTCTAATTAAAGAATTCCTAAATACTTTGAAAATATAAAACATTCCTGAATA

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