Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GTSF1P1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Sus scrofa
Coordinates chr5:14342669-14342833  UCSC
Strand -
Parental Sequence XM_003126205.6
Parental seq. overlap 146 bp
Parental seq. overlap (%) 3.5%
Genomic Region Intragenic (Cntnap2)
Retrocopy Summary GTSF1P1, located on chr5:14342669-14342833, is a retrocopy of the parental gene GTSF1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GTSF1
Full Name gametocyte specific factor 1
Also known as -
Coordinate chr5:19639326-19661773
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Dolphin Tursiops truncatus GTSF1P3
Horse Equus caballus GTSF1P2
Dog Canis familiaris GTSF1P3
Panda Ailuropoda melanoleuca GTSF1P3
Cat Felis catus GTSF1P6
Velvety free-tailed bat Molossus molossus GTSF1P3
Greater mouse-eared bat Myotis myotis GTSF1P2
Greater horseshoe bat Rhinolophus ferrumequinum GTSF1P1
Egyptian rousette Rousettus aegyptiacus GTSF1P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GTSF1P1
TCTGCCCTATGTTCTGCCATGGAAAACCCATCAGAAATGCACAGTAACTGGATAGCTGTCTCATCAAATGCCAGACCCTAGAAGACTCTTGCTTCTTCCTGCTACCTGTGGTTTCTTCATTTTTCTCCTAATCTAATATATAAGGATAAACTGTGACTTCC
>XM_003126205.6
GACTCGAACGCCCATTTCTAAGCGCCCATTGTCTTTTCTAAGATGGCCGCCGCAAGGCTGGGGGAGGCAGGGTGAGCTCCATCCACACAAGGCCACGGTCAGGGTCGTTACGTCAGGGAGCCAGCAAAGCACAGGCCTGAGGGGTGAGAGGTGCCTGAGGCGGGAGGGCCGAGGAGGCCCACGGCCCTCGCTCGGGCGCAGCCCAGCCCCTCCCCCACGCCACCTCCGTCACAGGAAGTGGGAGCCCCACCCCCTAACGTCAGGGGCCGGAAGTGAGCGTTGCTGGGGCGCGGGTGTCTGGAGAAGGCGGCTGTAGGGAGAGCGTGTCTCCGCCGAGCACTTGGATTTGGCACCTTCGTTTCCAACATGGAAGAAACTTACATCGATTCCCTGGACCCTGAAAAGCTCATACAATGCCCCTATGATAAAAATCACCAGATCAGGGCCTGCAGGTTTCCGTATCATCTTATCAAGTGCAGAAAGAATCATCCTGATGTCGCAAACAAACTGGCTACTTGTCCCTTCAATGCTCGCCATCAGGTTCCTCGGGCTGAAATCAGTCATCATATTTCAAGCTGTGATGATAAAAGCTGTATTGAGCAAGATGTAGTCAACCAAACCAGGAACCTTGGACAAGAGACCCTGGCTGAGAGCACATGGCAGTGCCCTCCTTGCGATGAAGACTGGGATAAAGATTTGTGGGAACAAACCAGCACCACATTTGTCTGGGGTACCGCCAACTACTGTGGCAACAACAGCCCTGCAAGCAACATAGTTATGGAACATAAGAGTAACCTGGCTTCAGGCATGCGTGTTCCCAAGTCTCTGCCGTATGTTCTGCCATGGAAAAACAATGGAAATGCACAGTAACTGAATATCTATCTCATCAAATGCCACACCCTAGAAGACTCTTGCTTCTTCCTGCTACAGTGGGTTCTTCATTTTTTTTCCTCCTAATCTAATTATAGAAAGATAAATTGTCTGTGACTTTCAAACTGACAAGTACCTTTTTTTTTCTCCCCTCTTTGAGTCCTTACTCATTTGATGCAAGAAAGAACCCTCATACTCAGAAGAACTGTTTTGAATAAACCACCATTGTAGATAGCTTGATAGTTTGGTTAAGTACCTGCAGCTCCAAGATCAGAAATCACATCCCATTCCACATTAATGAAACAGAATCATTTAAAGTTATCCTAAAGGATTTAGCTGAAGTAGGCAAGAAACTTGGGTTGGAAAAAGTAACTGTATTTGTGTTCTCTGACACACATGGACCAAATTCTTTTTAGCGTCTGTAGAATTGGGCCTTTTCTGAAGAGTGCATCTGTTTATTAATGTTGTTAGCATTTATATGTAGCAGTATGCCCCATTCCTGTTTAGAATCTTTAGGACATCTTGCTCCCTGAATATTTCTAACCTAGGGTAGGTTTCTTTCATTTCTTTGCTCTTTCTCACGTTTCAGCTAGATACTGTACTAGCTGTCAAACCATGTGTGGATTATGTAGGAGTGGAGATTGGAATGGAGAGGAGGAACTAATGTACATGTGGAGAAGAGATAGCTTTCCACCTGTGTGTGAAATTTGATTAAGCTTTAAAGCTAAAATGTGTGAAGGCTCTGCTGACTACCCTGGGACATGTGAATAATAAGTTAGATTTCTCAAACACCCAAGGCTCTGACTACCAGAGCATCTTATTGGCCTTTACAAGGAGACTTCCTAATCTCCAAACCAGTTTTTTGTTTGGTTGGTTGTTTTCAGGTTGGTGTGCTTTGGTTTTAAAACCATCTGGCATGAGGAAGGATTCGGGATCTGACATTGGCATAGATAGGGACTTGAGTGAAGCATACTGATCCATAATTCCAAAAATGATCTATTTAGCATTATTTGTAGGGGGAGTGCACTCTTGTGCAATGCCTCTTCCATGAGTTTTACACAAAACAAGATTGTATCCTGATGAAGCAGAGCTATCTTTTTATTTAGTTCCTGTCTCTAAAAACAGATTCAACATAAGCCCCAGTACAGTAGTACTTCTGCTCCTAGCTGTGTGAATAAGAGAATAAGTTAGACCATTTCTTCTGGAGAGGGAAAAAAAAAACACCTATTATGCCCTCAATTCTAGTCACTTATGTTTATATATCAGTCAACAACTCAAAACAGTTTAGCTTTATTTTTAAAAATCTTAATTAGAATATATAAGACCCTTTTGATTTCATTTGTTTGAATGATGACAGCCAGAACTGTCTATACTATACTTGTAACCCGGAAATCCTGCCTAGTTAGGAAAAACAGGGGTGTGATCTTACTGCAAAGAATTAGCTACTTGAggaattccctggtggatcagtgtgttaaggatccagcatcatcaccactgtggctctggttactgctataacaagggtttgaactctggcccaggaacctctgcatactatgggcaagccaaaaaaaaaaaaaAGAAAAAAAAAGGAATTGGCTGTTTGAATACAATTCAGCGAAGGAATTAAACAGAAAATACTTTGTTTTTTAAATATCTAAAGGAGCAAGATAGGCTAGCATCTATCCTTCATGAAAAACCTTATGTTGTTTGCCCACCACTACTAGAACTTAACTGCAACGCATCTGGTTTCTTGGAGTGAACAACACTCACTATAGGAGAATGCCTGCCTACGTTAATTTTGTCAGCTCACATAATAGACAACCCTGTTGTTTCTCTAGTAAACTAATGATTAAAGCCGCCAGTTTGTCTGGTCTGGGAGCTTTCAGAGACTGTTTAGGATTTTTATTGGGTGTAGGATTCACTAGTCTGGATTTAGTTTGCTGGAGATTTTTGGACAGTCCCAAAAACTAGAACATAGAGGTGACTGTTTACTACTTCTGTCAGAAGGTGGGAAGAGAAGCTACTTATTTTTGAGACCTTCTTTTTCAGGGGGATTGTGAACAGTGGGAGGGAAACAATTGAATATTCTACCTTAATTTCAGTTAAAGTCAAGTGTTATGGTTAAAGGTTAAATGCAGATGTGTTTCAAAAGCTTATCTTAGAGAGCCTGTGAGTCCTGCATTTTGATCTTATCCTGGGCTTCTCTCTCTACCCCAAGGAGAAGATTTGCTTTTTGGAAGACTGCCTTTCTTTGCAGATATTCTAGAAGTGCCACTGTGATTTGCAAATGTTCTTACCAGGAATAAACAAATGTAGGTAATAAATGATGCTTAGCTCTCCTGCTAGCTGTACCTGAGCTAAACAAGGAGTGTTTAGATTTAATTTCACATGGTACAATGCAGTAGCCTTTCATTGGTGAGACAGAACAGTAGCTGCTTGTGTTAGTCTCTTAGACAAAACGTTAGTCTCTAGTCATTCGTAGAGTCCTTTAGTTGCACTTTTCACAAATCATATTAAACTCCAAAGTAGACAGAAACCAAGGAGATGACACTATACTTCTTATTACCATTTTTTTAAAGAGGCAGCTTATAAAAATCTAAGTGATTTGTGTACTATATTTTAAATGATTGAAGCAGGATTGGCCTTGGGAAAAAGATACCACTAAGAAAATATTTGTTTTCTTGTGCCAATTCCCTGGGTAGTATAAGGAAAACTACTTAAGTCCCATGAGAAAATTACTATAGTGACTGCTCATTCTTTTGACGACTGTCTTCCTGGCACTGTTGAGGATCAGAACCTACTCACATTCCACTTTACAATCATGGCCTCTTCAGAGGCCGCTGACAACTCATTAACCTGTTACCAAATACCAACAGTCTCTGCTTTCTATTCCAGTCATATTTAGGTCTGATCAACACAGACCTGTGTATGAGCAGGGCATTTATTTGCCCTTGACATAGCAATTCCACTGCCTGGTCCAACTTACTTAACTCTTATCAACTTGGTAACTGGTAGGACAGATAAAAAAATCTCGGGGTGTTTATAGCTAGGAAGAACAGTATCCTAGGCCAGACAGTAACCCTAGAGGACAACAATATGGTCAGCAGATTTGCATTTGTGTTTACCTTGTTTAAAGACGGCATTTATATGAAACTAAAACAGTGTAAGCACCTTTGATGAAAGTGAAAAAGATAAGTTTGGTTGTTTTATTTTATGCTGTTTATATATACACATATATGTGGAAGAAACAAATCCAGGTTTTAAGAAAAACTACTGCATGTGAACCCAACCAGGCCTCTTAATTTTTGTTAAAATACTTGTCACTAAAATAAAGTATGCTCTCCCAGTTCA

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