Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name RPS25P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Sus scrofa
Coordinates chr1:96454615-96454964  UCSC
Strand +
Parental Sequence XM_003129920.3
Parental seq. overlap 302 bp
Parental seq. overlap (%) 42.1%
Genomic Region Intragenic (PIAS2)
Retrocopy Summary RPS25P1, located on chr1:96454615-96454964, is a retrocopy of the parental gene RPS25. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS25
Full Name ribosomal protein S25
Also known as -
Coordinate chr9:46237911-46242174
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Cow Bos taurus RPS25P12
Sheep Ovis aries RPS25P21
Dolphin Tursiops truncatus RPS25P8
Horse Equus caballus RPS25P1
Dog Canis familiaris RPS25P2
Panda Ailuropoda melanoleuca RPS25P10
Cat Felis catus RPS25P11
Greater horseshoe bat Rhinolophus ferrumequinum RPS25P14
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS25P1
GGCTGCTCTCCCAGCTTTGTGATGCCTGCCCAAGGATGGCAAGGAAAAGAAAGATGCCGGAAAGTCAGCCGAGAAAGACAAAGACCCAGTGAACAGGTCTGGGGGCAAGGCCAAAAAGAAGTGGTCCAAAGGCAAAATCTGGGACAAGCTCAATAACTAGTCTTGTCTGATAAAGCCATGTAAGACAAACTTTGTACTCAAGTTTCCAACTCCAATAAGCTTATAACCCCAGCTGTTGTCTCTGAGAAACTGAAGAGCCATGGGTCCCTGGCCAGGGCAGCCCTTCAGTAGCTTCTTAGTAAAGGACTCATTAAACTGGTTTCGAAGCACAGAGTTCAAGAAATTTACAC
>XM_003129920.3
CCTCCGCGTGGCTCCGCCCTTTGCCCCGGAAGCGCTCGCTGCGGACAGGGGTTTCTGGGCCTCTTCGCAAGCCGTGCTTCCTTTCTGTCCGACATCTTAGCGAGGAGGCACTACTGGTAGCTGCTCTCCCGGCTTCGCTATGCCGCCCAAGGACGACAAGAAGAAGAAAGATGCCGGAAAGTCGGCCAAGAAAGACAAAGACCCAGTGAACAAATCTGGGGGCAAGGCCAAAAAGAAGAAGTGGTCCAAAGGCAAAGTTCGGGACAAGCTTAATAACCTAGTCTTGTTTGACAAAGCGACATATGACAAACTCTGTAAAGAAGTTCCCAACTATAAGCTTATAACTCCAGCTGTTGTCTCTGAGAGACTGAAGATTCGTGGTTCTCTGGCCAGGGCAGCCCTTCAGGAACTCCTGAGCAAAGGACTTATTAAACTGGTTTCAAAGCACAGAGCTCAAGTAATTTACACGCGAAATACCAAGGGTGGAGATGCCCCAGCTGCTGGAGAAGATGCATAAACAGCTGTTACTTTGGGCCAAGGCACTGACTGAGTTCCTCAGATACATCTGAAGTATGTCTTGGGTACCCTCCTACCAGTGGAAGACCTAGAACCCCAGGGTTTGTCTGAAAGATCCCAAGTTCACTGAGTAGAGAGTGTTTTATCTTAACTTTTATTATTAAAAAAAAATAATAAAAATGCTTCTTACAGTTTGA

Publications

PMID - Link Title