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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TXNP2
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Sus scrofa
Coordinates chr4:108794723-108794948  UCSC
Strand -
Parental Sequence XM_021083263.1
Parental seq. overlap 197 bp
Parental seq. overlap (%) 27.1%
Genomic Region Intergenic
Retrocopy Summary TXNP2, located on chr4:108794723-108794948, is a retrocopy of the parental gene TXN. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TXN
Full Name N/A
Also known as TRX1
Coordinate chr1:251264180-251278000
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Cow Bos taurus TXNP1
Sheep Ovis aries TXNP1
Cat Felis catus TXNP4
Velvety free-tailed bat Molossus molossus TXNP14
Greater horseshoe bat Rhinolophus ferrumequinum TXNP14
Egyptian rousette Rousettus aegyptiacus TXNP3
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TXNP2
GATGTGGCTGACTGTCAGGATGCTGCTTCAGAGTGTGAAGGCAAACGCAGGCCACCGTTCCAGTTGTTTAAAAAGGGACCAGATGGGGGTGAATTTTCTGAAGCTAATGAGGAAAAAACATGAAGCCACCATTAATGAATTAATCTAACCCTGTTTTCTAAAACTATAACCGGCCATTGGCTGCTTGCAACTTCTAATGTTTTTATTCACAAAAAAGAAAGATCAG
>XM_021083263.1
GGTTCACCAGTGAAAATGAAAGGACTGAAAGGAGGGAAGGAGGGACGACAACCATCGCGGAAAAGTAGGGAAAACGAGGCGGGGGCGCACACGCAGAGAGACTTCCTGGTTATCGTTACTCAGCACTTGTGGGGTTCTCGGAACTGGGGGTGTGACGGTCTGGCGACCCTTTTGAGGAATCCTGAACTGGCCTGGGAGCGTCGGATGATGACCACGCTGGCCCCTACGCAGTACGCTTTTCAGGAAGCCTTGAACAGTGCAGGAGAGAAACTCGTAGTGGTCGATTTCTCAGCCACGTGGTGTGGGCCTTGCAAAATGATCAAGCCTTTCTTCCATTCTCTCTCTGAAAAGTATTCCAATGTCGTGTTCCTTGAAGTAGATGTGGATGACTGTCAGGATGTTGCTTCAGAGTGTGAAGTCAAATGCATGCCAACCTTCCAGTTTTTTAAAAAGGGACAGAAGGTGGGTGAATTTTCTGGAGCTAACAAGGAAAAACTTGAAGCCACCATTAATGAATTAATCTAATCATGTTTTCTGAAGACATGACCAGCCATTGGCTGTTTAAAACTTGTAATTTTTTATTTACAAAAAGGAAAGATCAAGTATGAAGACTATATACCCAATCACCATCTGATAAGTGATAATAAAATAGTAACTCTACCCTTTTTAAAACCTCCTGGTATCTTTGAATAGTTTTAAATAAATGAAAACTGATCATTTGA

Publications

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