Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PRPF38AP2
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr10:8253054-8254339  UCSC
Strand +
Parental Sequence NM_001131620.1
Parental seq. overlap 1200 bp
Parental seq. overlap (%) 32.9%
Genomic Region Intergenic
Retrocopy Summary PRPF38AP2, located on chr10:8253054-8254339, is a retrocopy of the parental gene PRPF38A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PRPF38A
Full Name N/A
Also known as -
Coordinate chr1:175226382-175240738
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PRPF38AP1
Chimpanzee Pan troglodytes PRPF38AP2
Bonobo Pan paniscus PRPF38AP2
Gorilla Gorilla gorilla PRPF38AP2
Gibbon Nomascus leucogenys PRPF38AP1
Green monkey Chlorocebus sabaeus PRPF38AP2
Crab-eating macaque Macaca fascicularis PRPF38AP2
Rhesus Macaca mulatta PRPF38AP2
Baboon Papio anubis PRPF38AP2
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PRPF38AP2
GAGAATCGAAGGCATTCTAAAATGGCTAACTCTACACTGAAGGATGAGCACAGCGTCCGCAGCACCAACCCTCAATATCTGGTGGAGAAGATCATTCGAACGCGAATCTATGAATCCAAGTACTGGAAAGAGGAGTGCTTTGGACTTATGGCTGAACTTGTAGTCGATAAAGCCATGGAGTTAACGTTTGTGGGTGGCGTCTATGGTGGCAACATAAAACAAACACCCTTTCTGTGTTTAATCTTGAAGATGCTTCAGATTCAATCCGAGAAAAGTATCACTGTAGAGTTTATAGGAAATGAAGATTTCAAGTATGTCCACATGTTGGGGGCACTTTACATGAGGCTGATGGGCACTGCAATTGATGGCTACAAGTACTTGGAGCCTTTGTACAATGACTATTGAAAAATCAAGAGCCAGAACCGAAATGGGGGTTTGAACTGATGCATGTAGATGAGTTTATTGATGAACTAGTGCACAGTGAGAGAGTCTGTGATATCATTCTGCCCCGGCTACAGAAACGCTAGCTATTAGAGGAAGCTGAACAACTGGAGCCTTGAGTTAGTGCTCTGGAAGAGGACACGGACGACGTGGAGTCCAGTGAAGAGGAAGAAGAGGAGGATGAGAAGTTGCAAAGAGTGCCATCACCTGATCACCGCCGGAGAAGCTACGGAGACTTGGACAAGCCCCGTCCCTCTCCCACACTGTGCTACAGAAGGAGTAGGAGTCGGTCTCCCAGAAGGCGGAATCGATCTCCCAAAAGGAGAAGCCCCTTCTCCCGCCGAGAAAGGCATCCGAGCAAGAGTCCAAGACATCACCGCAGCAGATCCCGAGATCGGCGGCACAGATCCCGTTCCAAGTCCCCAGATCCTCCCCGTAGTCACAGACACAGGAGCCACTCAAAGTCTCCCAAAATGTCTAAGAAGAGCCACAAGAAGAGCCGGAGCGGGAATGAGTAATAGACTCAGTTTGGTTTTGGTCCAAATGGGCTCCTGTGGATGTGAGGATATCTGTCTATGTGGAAGGATTAAGATCTCCCCAGGCAGCTATAAGAATATTTTAGTTTTTTCTTATCAAGTTTCTCAACCTTTATTTTCAATGAAGGAGGTGCTGAGTTTTGTATCTCTTTTTAATCATAATCAACAACAGTTTCTGACCCAACTTACCTTGACTGTATTCAAACTTATGAGGGTAGAAAAGATCTGAAGGTTGGGGATGTGAATGACAAGGATAGGATGCGGCCACGTAATGACCCTTTCCCTTTTTGTTAAACCGGACACATCTGT
>NM_001131620.1
ATAGAATTGAAGGCATTCTAAAATGGCTAACCGTACAGTGAAGGATGCGCACAGCATCCACGGCACCAACCCTCAATATCTGGTGGAGAAGATCATTCGAACGCGAATCTATGAGTCCAAGTACTGGAAAGAGGAGTGCTTTGGACTTACGGCTGAACTTGTAGTCGATAAAGCCATGGAGTTAAGGTTTGTGGGTGGCGTCTATGGTGGCAACATAAAACCAACACCCTTTCTGTGTTTAACCTTGAAGATGCTTCAAATTCAGCCGGAGAAGGATATCATTGTAGAGTTTATCAAAAATGAAGATTTCAAGTATGTCCGCATGCTGGGGGCACTTTACATGAGGCTGACAGGCACTGCAATTGATTGCTACAAGTACTTGGAGCCTTTGTACAATGACTATCGAAAAATCAAGAGCCAGAACCGAAATGGGGAGTTTGAATTGATGCATGTTGATGAGTTTATTGATGAACTATTGCACAGTGAGAGAGTCTGTGATATCATTCTGCCCCGACTACAGAAACGCTATGTATTAGAGGAAGCTGAGCAACTGGAGCCTCGAGTTAGTGCTCTGGAAGAGGACATGGATGATGTGGAGTCCAGTGAAGAGGAAGAAGAGGAGGATGAGAAGTTGGAAAGAGTGCCATCACCTGATCACCGCCGGAGAAGCTACCGAGACTTGGACAAGCCCCGTCGCTCTCCCACACTGCGCTACAGAAGGAGTAGGAGCCGGTCTCCCAGAAGGCGGAGTCGATCTCCCAAAAGGAGAAGCCCCTCCCCTCGCCGAGAAAGGCATCGGAGCAAGAGTCCAAGACGTCACCGCAGCAGGTCCCGAGATCGGCGGCACAGATCCCGTTCCAAGTCACCAGGTCATCACCGTAGTCACAGACACAGGAGCCACTCAAAGTCTCCCGAAAGGTCTAAGAAGAGCCACAAGAAGAGCCGGAGAGGGAATGAGTAATGGACTCAGTTTGGTTTTAGTCCACATGGCCTCCTGTGGATATGAGGATATCTGTCTATCTGGAAGGATTAAGATCTCCCCCAGGCAGCTATAAGAATATTTTAGTTTTTTTCTTATCAAGTTTCTCAACCTTTATTTTTAATGAAGGAGGTGCTGAGTTTTGTATCTTTTTAATCATAATCAACATCAGTTTTTGACCCAACTAACCTTGACCGTATTCAAACTTATGAGAGTAGAAAGGATCTGGAGTTTGGGGATATGAATGACAAGAAAAGGATGTGGCCACCTGATGACCCTTTCCCTTTTTATTAAACCGGACACACCTGTTTCCCATTTCGCTGTAGTTTAGTTTTTGGTTTGTTGTGGTTGGAACTGCTTTGAGAATCCTGGGATTTGTGCTGCTGCTATTATTCAAAGATCAAAGGAGTAAAACAGAGTAGCTCCTAACTTTTTTCCAGCAGCAGCAAGTGGTAATAAACATGAAAACTGGTTTGTAGCAGTTTTGAAAGAACAGGATGCATTCAAATGTAAGGCTTCTTCTGGATCATTAAAGCCAGTTTCATCAAACAGTTCAACAGAGAGCGGCACTTAATACCCTTTATACAGCCCATTTTTTCATAGTTTCATTTGTTCTTGCCCATAAGCTTGAAATCCAGGTTAAGGTATCCAGCCTTTATCATATAAGCATTGACATTATCCAGGCCTAGTCAGTAGCAGTAGGGTAACAGGATTGAAAAAGATTTGATGGAGAGGAAAGTAAATAATATTAGTCATGGTTTTGACTTAAATTGCTAGACAGTCGTGCCATTCACAAAGTCAGAAAATACAGCAGGAAGAGACAGCTTTTAGAGGGGCAGAGAATTAGAGGATTGTGGTAGTAATGAAAATGATGCATTCAGTTTAACAAGTTTAATTTGAGACAGCTATGGTATAGCTAAAAACAAAAGCCCATAAGTTGGAGATAGGGACCAGAGTTTAACATAGCGATCTAGGCCAGAATTGACAATGTTTAAGTAATTGTGGAATCTGTCAATAAGACTTCCCAGAGTGTTTATATATATCAGAAATGCACACAACAGAACCACAGGCAACACCAACACAGGAAGAAATAGAAGTCATGTATTGAAAACTGGAATGGCCCATTCAGAAGGACAGGAGAATTAGGAGAGAGTGAGTGAAAGAAGCCAAGGGTCAAGAATGCAGAAGCAAAGGAAGGACTAAAAAGCCTCCACGGACATCAATAACCAAGAGATTATTAAGATCTTTGCTAGAAGAGTTCCTTTACCTGTACTTAACTCCCTTAAAGAGAAAAGTGATGGAATGACTTCCTGCAACTGTAGTCCCAGCAGGAACTGTGAAGACCAACTGCCCTGCAGGATCCAGTTTTTCTTGGGAGGTTGTATCTGGTCATAAGGTAAACATTCTATATATTCTATGCCTGCTCTAGAATTGAAAGACTTCTGCAGCAGTATTAAAGCATTTTTTAATCTCATTTGAGCTTTCATATTCTTCAGTGATTCCTTTCATAATACCTGAGTTAATAAAAGTGGTCTGAAAGAGCTCTTATGGTTCCTGATACAACTATATAGGACTACCTTTTAAGATTAAATATAAGCATCTCTACGTAAATGTATTACAGTGTCATAGCAGTTATTTCTTTATGAAAGTGATCTAGGTAGAAAGAAATGTCTTCTGGCATGGACAGAAATGACCCATGGACCAACCAAGCTGTCATCCAGTACACTCTTAAAATAAAACTTTATCTTAAAATATGTTTTAAAGTAAAAATAAACCCACACACAAAGCCCAATAAATTTTAGTAACAGAAATAAACCTCCCCAAACAAACATTAAAACATACTTGTTTAGACGTATGGTAATATGTGGACCAAAATTGAGGTACCACAGCCAATCAATAGCAGGAAGGAGAATGTCCCTATTCTTTAATTAGAAGAAGGAGGTAAGAGTAAGACATGTTGCATGTCTGTAGACATTGTTTTGATAAAATTACACAGGAGATGGAGCTTGAGGACAAACCTTGCTGTAAGGCTCTTTCTGTTATCTATGTGCTTGCCTATGGATGAAGCATTTTAAACTTTTTGACTACAGCATACATTTTAAAAACGTCTTTTACATCTTACCTCTCTACACATCTGTATTCTGTACTGAGACAAATTTCAGGAAAGAATACTTACTACGCAAAGTGAATTCTGGTATTTCCTACTTGATAAGTTTTTAATATTGGATGAAACCACTTAATCGATTTCACTTCCAATAATTTGAAATACACAGACTTAAAAGCTTTGCCATAGGGCACAATCTCGCCTTTTAATACTAAGAAATTAAGGGAGATGTGTTCCAAGGGGCAAAAGAAATAATGCATTTTTggccaggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacctgaggtcaggagtttgagaccagcctggccaacatggagaaaccctgtctctactaaaaaatacaaaattagccgggcatggtggcgcatgcctgtaatcccagttactcgggaggctgaggcaggaaaatcacttgaacccgggaggcagaggatgtggtgagctgagatcgtgccactgcacttcagcctgggcaaaaagagcgaaactccatctcaaaaaaaaaaa

Publications

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