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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL32P5
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr22). Each line represents a retrocopy.
Species Bos taurus
Coordinates chr10:59544708-59545045  UCSC
Strand -
Parental Sequence NM_001034783.2
Parental seq. overlap 282 bp
Parental seq. overlap (%) 55.7%
Genomic Region Intergenic
Retrocopy Summary RPL32P5, located on chr10:59544708-59545045, is a retrocopy of the parental gene RPL32. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL32
Full Name ribosomal protein L32
Also known as -
Coordinate chr22:56344651-56348417
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa RPL32P1
Sheep Ovis aries RPL32P3
Dolphin Tursiops truncatus RPL32P4
Horse Equus caballus RPL32P1
Dog Canis familiaris RPL32P81
Cat Felis catus RPL32P28
Greater horseshoe bat Rhinolophus ferrumequinum RPL32P20
Egyptian rousette Rousettus aegyptiacus RPL32P4
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL32P5
AAAAGAAGACCAAGAATTTCATCCAGCACCAGTCAGCCTGATATATCCAAATTAAGCGTAACTGGCAGAAACCCAGAGACATTGACCACAGGGTACAGAGAAGATTCAAGTGCCAGATCTTGATGCCCAAGATTGGTCATGGTAGCAACAAGAAAATGAAGCACACGCTGCTTAGTGGCTTCTAGAAGTTTCTGGTCTGTAACATCACAAAGCTGGAAGTGCTTCTGATGTGCAACAAATTTTACTGTGCTGAGATGACTCACATTTCCTTCAAGAACCTCAAAGCCATCATGGAAAGAGCAGCCCAGCTGGCGTGAGTCACCAATCCCAATGCCAGG
>NM_001034783.2
CTTCCCCGGCGCTGCCTACGGAGGTGGCAGCCATCTCTGACTCGGCATCATGGCCGCCCTCAGACCCCTCGTGAAGCCTAAGATCGTCAAAAAGAGGACCAAGAAGTTCATTAGGCATCAATCAGACCGATATGTCAAAATCAAGCGGAACTGGCGGAAGCCCAGAGGCATTGACAACAGGGTGCGCAGAAGATTCAAGGGCCAGATCTTGATGCCCAACATTGGTTATGGGAGCAACAAGAAAACCAAGCACATGCTGCCCAGCGGCTTCCGGAAGTTCCTGGTCCACAACGTCAAGGAGCTTGAGGTGCTGCTGATGTGCAACAAATCTTACTGTGCTGAGATTGCTCACAACGTCTCCTCCAAGAACCGCAAGGCCATTGTGGAAAGAGCAGCCCAGCTGGCCATCAGAATCACCAATCCCAATGCCAGACTGCGCAGCGAGGAAAATGAATAGACAGCTCGTGTGCACATTTTGTTTGTGGTAATAAAAGCATAAAACCCAA

Publications

PMID - Link Title