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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL35AP1
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Bos taurus
Coordinates chr2:7420219-7420457  UCSC
Strand +
Parental Sequence NM_001025321.3
Parental seq. overlap 199 bp
Parental seq. overlap (%) 43.9%
Genomic Region Intergenic
Retrocopy Summary RPL35AP1, located on chr2:7420219-7420457, is a retrocopy of the parental gene RPL35A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL35A
Full Name ribosomal protein L35a
Also known as -
Coordinate chr1:70176686-70180162
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa RPL35AP25
Sheep Ovis aries RPL35AP3
Dolphin Tursiops truncatus RPL35AP12
Horse Equus caballus RPL35AP2
Cat Felis catus RPL35AP32
Pale spear-nosed bat Phyllostomus discolor RPL35AP31
Greater mouse-eared bat Myotis myotis RPL35AP30
Greater horseshoe bat Rhinolophus ferrumequinum RPL35AP8
Egyptian rousette Rousettus aegyptiacus RPL35AP7
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL35AP1
AAAACTGAATTCTATTTGGGCAAGAATTGCTCTTTTGTGTACAAAGCAAAGAACACAGTGACTCCTGGTGGCAAACCAAGCAAAACCAAAAGAATCTGGGAAAAGTCATTTCACTTGTGTTCATGGAAACAGTGGCATGCTGAGTGCCAAATTCTGAAGCAATCTTCTGCTCAAGCCACTGGACACAGAATCTATGTGATGCTGTACCCCTCAGGATTTTAAACTTACTGAAAATAAAT
>NM_001025321.3
TCTTTCAGCCATCTTGGACCCTGTGAAGGCCTGCTGGGAACGGGACTTCTAAAACGACAAATATGTCTGGAAGGCTGTGGTCCAAGGCCATTTTTGCTGGCTATAAACGGGGTCTACGGAACCAAAGGGAACACACTGCTCTCCTGAAAATTGAAGGTGTATATGCTCGAGATGAAACTGAATTCTATTTAGGCAAGAGATGTGCTTATGTGTACAAAGCAAAGAACAACACAGTAACTCCTGGTGGAAAACCTAACAAAACCAGAGTAATCTGGGGAAAGATAACTCGAGCTCATGGAAACAGTGGCATGGTTCGTGCCAAATTCCGAAGCAACCTTCCTGCTAAGGCCATTGGACACAGAATTCGTGTGATGCTGTACCCTTCGAGAATTTAAACTACTTGAAAATAAATAAAAGTGTGGATTTGTCCTGTTGTGCTTTTGTTAAA

Publications

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