Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PAXBP1P1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Ovis aries
Coordinates chr4:125579246-125579411  UCSC
Strand +
Parental Sequence XM_015092372.2
Parental seq. overlap 136 bp
Parental seq. overlap (%) 2.8%
Genomic Region Intergenic
Retrocopy Summary PAXBP1P1, located on chr4:125579246-125579411, is a retrocopy of the parental gene PAXBP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PAXBP1
Full Name N/A
Also known as GCFC1
Coordinate chr1:130895448-130928639
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Gibbon Nomascus leucogenys PAXBP1P1
Rhesus Macaca mulatta PAXBP1P1
Baboon Papio anubis PAXBP1P1
Pig Sus scrofa PAXBP1P1
Cow Bos taurus PAXBP1P1
Dolphin Tursiops truncatus PAXBP1P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PAXBP1P1
AAGAACTTTAGACAATGATGTATTCATGCCCTTATATGACAAAATgtcttagaaaacaaaaatttgggACCCCATTGGTATTTTCAGAGATAATTTTGGTCTTTAGTCAACCTATTAGGACATTTTCTTCAGTGTATAGCATTTTCTCAAATAAAAGTCATCAGGA
>XM_015092372.2
CGGGGAGATCGCGCGTGCGCTGTCTCGAGCTCGGCGCTGCCGGGGCGGCGGAGTTGGGAGccggctggtgtgtgtgtgtgagagcgcTGTACGGGACGTGGGGCAATGTTCCGAAAGGCCCGGCGGGTGAACGTGCGCAAGCGGAATGACTCGGAGGAGGAGGAGCGAGAGCGCGATGAGGAGCAGGAGCCCCCGCCgttgctgccgccgccgcctggCACCGGCGAGGAGCCTGGCCCCGGCCCGGGCCCCGGCGGCGGCGGAGGCGACAGGGCCCCCGCGGGCGAGTCCCTGCTAggcccggggccgccgccgccgccgccggccgcGCTGACCTCGGGGACGGAGGCCGGGGGCTGCCTCCCCGGCGGCGCGGAGCCCGGCAACGGGCTGAAGCCGCGCAAGAGGCCGCGCGAGAACAAAGAGGTGCCCCGGGCCAGCCTGCTCAGCTTCCAGGACGAGGACGAAGaaactgaagaagtttTCAAAGTGAAGAAATCCAGTTACAGCAAAAAGATAGTAAAATTGCttaagaaagaatataaagaagatcTTGAAAAATCTAAGATTAAGACAGAACTCAACTCATCTGCCGACAaCGAACCACCTTTGGACAAAGCAGGTCATGTTAAGGACGCCAGTCTAGAAGATGGAGTTATCATCAGTGAACACGGGGAAGATGAAATGGATATGGAAagtgaaaaggaggaagaaaagccaAAGGCTGGTGGAGCCTTTTCAAATGCTTTATCTTCTTTAAATGTTCTCCGTCCAGGAGAAATTCCAGATGCAGCTTTTATACATGCGGCAAGGAAAAAACGTCAGATGGCCCGGGAATTGGGAGATTTCACTCCTCATGATAGTGAGCCTGGGAAAGGCCGTCTTGTTAGAGAAGATGAGAACGATGCCAGcgatgatgaagatgatgatgagaAACGCCGAATAGTTTTTTCTGTGAAAGAAaagtcacagagacagaaaattgcagaggaaatagGTATCGAGGGGAGTGACGATGACGCTCTAGTAACTGGGGAGCAGGATGAAGAGCTCAGCCGATGGGAGCAGGAGCAGATAAGGAAAGGAATCAATATCCCGCAGGTTCAAGCAAGTCAGCCCACGGAAGTGAACATGTACTACCAGAACACCTACCAGACAATGCCTTATGGTTCATCCTATGGCATTCCATATAGTTATTCAGCCTATGGATCATCTGATGCCAAATCTCAAAAAACAGATAATACAGTCCCTTTCAAAACTCCCAGTAATGAGATGACTCCCGTTACTATTGATTTGGTAAAGAAACAGCTTAAAGACAGGTTGGACTCCATGAAAGAACTGCACAAAGCAAACCGACAGCAGCACGAGAAACACCTGCAGAGCCGAGCGGACTCCACCAGGGCCATTGAGAGACTAGAAGGGTCTTCTGGGGGTATTGGTGAACGGTATAGATTTTTGCAAGAAATGCGAGGGTATGTCCAAGACTTGCTTGAGTGTTTCAGTGAAAAGGTGCCACTGATTAATGAACTTGAATCAGCAATACATCAGCTGTACAAACAGCGAGCTTCCCGCCTTGTCCAAAGACGACAAGATGATATTAAAGATGAATCTTCGGAGTTTTCAAGCCATTCAAATAAAGCTCTGATGGCACCAAATCTTGACTCCTTTGGACGAGATCGGGCACTGTATCAAGAGCATGCCAAACGTCGGATTGCAGAACGGGAGGCCAGGAGGACTCGTCGTAGACAAGCCAGAGAGCAGACTGGTAAGATGGCAGATCACCTTGAAGGCCTTTCCAGTGATGATGAAGAAACTTCTACAGATATCACAAATTTCAATCTGGAAAAAGATCGCATTTCAAAAGAGTCCAGCAAAGTTTTTGAAGATGTCCTTGAAAGTTTCTATTCAATCGATTGTATTAAATCCCAGTTTGAAGCCTGGCGTTCAAAATACTACACATCCTATAAGCATGCCTACATCGGCCTTTGTTTGCCAAAGCTGCTCAACCCCCTTATAAGGCTGCAGCTTCTCACTTGGACTCCGCTTGAGgcAAAATGTCGTGACTTTGAGAACATGCTGTGGTTTGAATCTTTGCTGTTTTACGGTTGTGAAGAGCGAGAGCAAGAAAAGGACGATGTTGATGTTGCACTGTTGCCTACCATTGTGGAAAAGGTGATTCTTCCTAAACTAACAGtgATTGCTGAAAATATGTGGGACCCCTTTTCTACAACACAGACTTCAAGAATGGTTGGAATTACtctaaaattaataaatggataTCCTTCAGTGGTgaatgcagaaaataaaaatacacagATATACCTAAAAGCACTTCTATTGAGAATGAGGAGAACTTTAGATGATGATGTATTCATGCCCTTGTATCCCAAAAAtgtcttggaaaataaaaattctgggCCTTACTTGTTTTTTCAACGACAGTTTTGGTCTTCAGTTAAGcTCTTAGGGAATTTTCTTCAATGGTACGGCATTTTCTCAAACAAAACTCTTCAGGAATTATCAATAGACGGTTTATTAAATAGATACATTCTCATGGCTTTTCAGAATTCAGAATATGGAGATGACAGCATCAAAAAAGCCCAAAATGTAATTAATTGTTTCCCCAAGCAGTGGTTTGTGAATCTGAAAGGAGAAAGAACTATTTCTCAGTTAGAAAACTTCTGTCGATACCTTGTACACTTAGCAGATACAATTTACAGAAACAGTATTGGGTGCTCTgatgtggaaaaaagaaatgcaagagaaaacataaaacagatagTAAAACTCCTTGCAAGTGTTCGAGCTCTGGATCATGCTATGTCTGTTGCAAGTGACCACAATGTGAAAGAATTTAAGTCTTTGATCGAAGGAAAATAGATCTATGAGACTAAAAAAAGCCTATTTGCTCTAATACCATTCCCAGTGTaaaaattttgtatatatgtaaagTTTCTTAAACTGTAAAATATTGACTCATTTTAATACAAAGAATGTTATTAATATTCAATACTGTGTCCTTAAATGCAATTTCTTCAGAATGAAAGGAATTCAGATTATTTCTAGGAAGTCTATGAATGGTTTCCTTACTGCCTGCCATACTTTGTTTACAGAAGTATTTTATATGGTCAATTAAATTAACCCTCTCAGTTAACTGTTCTCTGTAAAGGATGTGTGCAGTGTATActgtatatttatgcatatatatatttataccacCATGGAGTTACTTTCACACTGGAAATCTGTGGTGTTTTTCTACAGAGTAAGCCTTTTAACAGCAGAAAAATTATTCAGTAGCAAATTGTCTTAGGGAAATTACTACACTGTTGCAACAAAAGGGCTGGCAAGTGACTAAATATTCATCACTTTTGGTTAGCAGTTGCTGTCACTGAAGCTGTGCTGCCTTAAAATTGAGAGTTGAGTGTGGACTTAGTCATTGGTGAATGGTGAACTTTTCTTCCTTGAGTTAGCATTATAGTCAACTGTTCGTTTAATGTGAGCTCTAAATAATATATGCAACATAGGTTTCTGAAAAGAACACAGACATTTCATTTTTGGAAATAATAGACCCACAACCTAACTGCATGGTTTGGGCTGACTGTCCTGTCTCATTATGATTTTACTCCCTGACCAGGTTAAATACATGCATTTGTATTTTAGTAGTCTAGCATTATATTTAAAATCCCACATATGTGAGTTATATATGCAATAAAGAACACATTTTGCTGATTCGCCACACCCAGGCAGTTTAATACCCATGGTCTTCTATAATATTtatgtactgtgcttagttgctcagtcgtgtctgactctttgagaccctgtggactgtagcctaccaggctcctctgtccttggggattctctaggcaaaaatactggagtgaattgccgtgccctcctccaggggatcttcccaacccagggatcaaacccaggtgtcccacactgcggggggattctttaccgactgaaccaccagggaagccctataatattTATACCATGTTGTAAATGATTCTGTGATTTTCAGAAGAACTTTATGGAAATTAACTACTGTTTGATAGTTACATATGTAATTAGCCTTTAGCCAagcattaaattaatttttaaatagaaccATTGTTGTATTTGGCTGGCAACTAATTTTACTTAGAGCATTTCAAATGACTGATATAGTGAGATAATTATCATGAGTATCCTTGGTCAAGTCAAATACTATTTAGAACAGTGTCATGCACTCTTTATTGCTCTTGTCAGTTTTATCTTTATTGTAGGAACACTGCTTATCCCTACAGATTCATTCTTGATGAATTTTGTTACAACTCAGTGGCCTActaaatagaattaaaatagaaGGCTTATTCTCAACTTCAGTGTACTAAAATAtatagacgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatgacatgcaCATCATTTGTGccttaaatttgttttttgaaaCCTACTGGACTGATTACTTTTCCTATATCTGCTTTTAAGGACTTGAAGTTAAACTCAGATTCTTCATCCTATAAAATCCATCAGGCTCTTATACTTTCAGGAGTGAGTTTGGTGTAAGGTGAATTTAGCATAGAACTGTGTGTTGAACAAGTAGTTCTTATATCTCAACCTGAAGTTTTTTATTCCTGAAATAGGTGAAGGACATTCTTTCTTAGGAAGGAAATTGTCAAATGTTTAAATTCAGAGGGTGACATTTTAATAAAGCTTGAGgtttttgtcttttca

Publications

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