Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name RPS11P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Ovis aries
Coordinates chr1:58409347-58409503  UCSC
Strand +
Parental Sequence XM_004015372.3
Parental seq. overlap 131 bp
Parental seq. overlap (%) 17.9%
Genomic Region Intragenic (MIGA1)
Retrocopy Summary RPS11P1, located on chr1:58409347-58409503, is a retrocopy of the parental gene RPS11. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS11
Full Name N/A
Also known as -
Coordinate chr14:59387710-59390371
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa RPS11P2
Dolphin Tursiops truncatus RPS11P1
Horse Equus caballus RPS11P1
Dog Canis familiaris RPL34P5
Cat Felis catus RPS11P10
Pale spear-nosed bat Phyllostomus discolor RPS11P5
Velvety free-tailed bat Molossus molossus RPS11P5
Greater mouse-eared bat Myotis myotis RPS11P2
Kuhl's pipistrelle Pipistrellus kuhlii RPS11P1
Egyptian rousette Rousettus aegyptiacus RPS11P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS11P1
ATACAAGAACAATGGTCTGGACTTCTAGGCACCCAGACGGCCATTGAGGGCACCTACACTGACAAGAAATGTCCCTTTACTGATAATATCTCCATCTGAGGGCAGATCCTGTCTGGTGTGGTGACTAAGGTGAAGATGCAGAGGACCATCTTCATCC
>XM_004015372.3
TCATGGCGGCTTTCATTCTGTCTGCGAATCGCGTGCTTAGGTAGGACCGTTCGCCAATCAGAGTCTCGCCAAGGCACCGCCCCAAACCGTGTCTGCCCCGCCCCTTTGTCGTCACTTCCTCTCTAACCCTTGTGCAGTCGATAAGGAAACCCGGACGCCACTGCGGCCTTCCTTTTTTCAGGCAGCCGGGAAGATGGCGGACATTCAGACAGAACGTGCGTACCAAAAGCAACCGACCATCTTTCAAAATAAGAAGAGGGTCCTGCTTGGAGAAACTGGCAAAGAAAAGCTCCCTCGATACTACAAGAACATTGGTCTGGGCTTCAAGACTCCAAAGGAGGCCATCGAGGGCACCTATATTGACAAGAAATGCCCTTTTACGGGTAACGTCTCCATTCGAGGGCGGATCCTGTCTGGCGTGGTGACCAAAATGAAGATGCAGAGGACTATCGTCATCCGCCGAGACTACCTTCACTACATCCGGAAGTACAACCGCTTCGAGAAGCGCCACAAGAACATGTCCGTGCACCTTTCTCCCTGCTTCAGGGACGTCCAGATCGGTGACATCGTCACGGTGGGTGAGTGCCGGCCCCTGAGCAAGACAGTGCGCTTCAATGTCCTCAAGGTCACCAAGGCTGCCGGCACCAAGAAGCAGTTCCAGAAGTTCTGAGACTGGACCTCTGCCTGCTGCCTCAAACACAATAAAGTTATTTTCCCAGGCTCTGGAAA

Publications

PMID - Link Title