Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name CNBPP1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Equus caballus
Coordinates chrX:58634392-58634908  UCSC
Strand +
Parental Sequence XM_003363052.4
Parental seq. overlap 419 bp
Parental seq. overlap (%) 25%
Genomic Region Intergenic
Retrocopy Summary CNBPP1, located on chrX:58634392-58634908, is a retrocopy of the parental gene CNBP. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CNBP
Full Name CCHC-type zinc finger nucleic acid binding protein
Also known as -
Coordinate chr16:2982049-2992606
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Crab-eating macaque Macaca fascicularis CNBPP1
Rhesus Macaca mulatta CNBPP1
Pig Sus scrofa CNBPP1
Sheep Ovis aries CNBPP1
Dog Canis familiaris CNBPP2
Panda Ailuropoda melanoleuca CNBPP2
Cat Felis catus CNBPP1
Pale spear-nosed bat Phyllostomus discolor CNBPP4
Kuhl's pipistrelle Pipistrellus kuhlii CNBPP2
Greater horseshoe bat Rhinolophus ferrumequinum CNBPP1
Egyptian rousette Rousettus aegyptiacus CNBPP2
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Dolphin Tursiops truncatus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CNBPP1
TGACATCTGTTACCGCTGCGGTGAGTCTGGTCATCATGCTAGGGACTGTCACCTTCTCGAGAACATCTGCTACAACTGTGGGAGAAGTGGCCACATTGCCAAAGACTGTACGGAGCCTAAGCGAGAGAGGGAGCAGTGCTGTTACACTTGTGGCAGACGAGGCCATCTGGCTCGCGATTGTGACCGTCAGGAACAGCAAAAGTGTTACTCTTGCGGCGAATTAGGCCACTTTCAGAAAGACTGTACCCAAGTCAAGTGCTACCGGTGTGGCGAGACCGGCCACGTGGCCATCAACTGTAGCAAGAAGAACAAGGTCAATTGCTACCGCTGTGGCAAGCCCGGACATCTAGCCCGGGAATGCCCCACTGAGGCTACCGCTTAGTTTTTTTCCTTTGTCCTCCCCTCCTTTTGCTGATTGATAATTACATTATTTTCTCTGAAACCTCTTCACTGACCAGAGGTTCACAGACAGAGGCTACTCCCAGGCTAGTGAGCATTAATTACCGTGTTAAAGGAG
>XM_003363052.4
GGCGAGGCGGAGGAGAGCCGTGCGCAGCGGCGTGTGTGGGGCCGTGTGCAGACCCGCGTGTGGCGCAGGCAAGGACCCTGAAAATAAACAGCCGCTACCTTGTGAGCGGTCTTCCTCGGGCCTGCGACAGAGTCTCCGCCGCTGCGGGTCTGCTCAGACGCCGAAGATCTGACTGCAGCCATGAGCAGCAATGAGTGCTTCAAGTGTGGACGATCTGGCCACTGGGCCCGGGAATGCCCTACTGGCGGAGGCCGTGGTCGTGGAATGAGAAGCCGTGGCAGAGGTTTCCAGTTTGTTTCCTCATCTCTTCCAGACATCTGTTATCGCTGTGGTGAGTCTGGTCATCTTGCCAAGGATTGTGATCTTCAGGAGGATGCCTGCTATAACTGCGGTAGAGGTGGCCACATTGCCAAGGACTGCAAGGAGCCGAAGAGAGAGCGAGAGCAATGCTGCTACAACTGTGGCAAACCAGGCCATCTGGCTCGTGACTGTGACCACGCGGATGAGCAGAAGTGCTATTCTTGTGGAGAATTTGGGCACATTCAAAAAGACTGCACCAAAGTGAAATGCTATAGGTGTGGTGAAACCGGTCATGTAGCCATCAACTGCAGCAAGACAAGTGAAGTCAACTGTTACCGCTGTGGCGAGTCAGGGCACCTTGCACGGGAATGCACGATTGAGGCTACAGCTTAATTATTTTCCTTTGTCGCCCCTCCTTTTTCTGATTGATGGTTGTATTATTTTCTCTGAATCCTCTTCACTGGCCAAAGGTTGGCAGATAGAGGCTACTCCCAGGCCAGTGAGCTTTACTTGCCGTGTAAAAGGAGGAAAGGGGTGGAAAAATATCGACTTTCTGCATTTAACTACAAAAAAAAAAAGTTTATGTTTAGTTTGGTAGAGGTGTTATGTATAATGCTTTGTTAAAGAACCCCCTTTCCGTGCCACTGGTGAATAGGGATTGATGAATGGGAAGAGTTGAGTCAGACCAGTAAGCCCGTTCTGGGTTTCTTGAATATGTTCCCATGTAGGAGGTAAAACCAATTCTGGAAGTGTCTTTGAGCTTCCATAAATAACTTTAATTTTAGCTTAATGATGGCCTTGGATTGTCTGACCTCAGTAGCTATTAAATAACATCAAGTAACATCTGTATCAGGCCCTACATAGAACGTACAGTTGAGTGGGAGTAAACAAAATAAAAAGACAAATGTGCGTGTTAATGGCTATGTGAGAAAAATCGGGATAAAAGCCTAAACAGGAACAACTTCATCACAGCGTTGATGCTGGATATACAGATGGTGATGGCAAAGGTTTAGAACACATTTTTTCAAAGACTAAATCTAAAACCCAGAGTAAACATCTATGCTCAGAGTTAGCATAATTTGGAGCTATTCAGGAATTGCAGAGAAATGCATTTTCACAGAAATCAAGATGTTATTTTTGTATACTATATCACTTAGACAACTGTGTTTCATTTGCTGTAATCAGTTTTTAAAAGTCAGATGGAAAAAGCAACTGAAGTCCTAGAAAATAGAAATGTAATTTTAAACTATCCAATAAAGCTGGAGGAGGAAGGGGAGTTTGACTAAAGTTCTTTTTGTTTGTTTCAAATTTTCATTAATGTATATAGTGCAAAATGCCATATTAAAGAGGGGAATGTGGAGGACTGAAA

Publications

PMID - Link Title