Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name C1GALT1P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Equus caballus
Coordinates chr1:149064901-149065284  UCSC
Strand +
Parental Sequence XM_014739098.2
Parental seq. overlap 323 bp
Parental seq. overlap (%) 5.5%
Genomic Region Intragenic (INO80)
Retrocopy Summary C1GALT1P1, located on chr1:149064901-149065284, is a retrocopy of the parental gene C1GALT1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name C1GALT1
Full Name core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Also known as -
Coordinate chr4:41056490-41095918
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Mouse lemur Microcebus murinus C1GALT1P1
Dolphin Tursiops truncatus C1GALT1P1
Panda Ailuropoda melanoleuca C1GALT1P1
Cat Felis catus C1GALT1P2
Velvety free-tailed bat Molossus molossus RPS24P3
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>C1GALT1P1
GGATGAACTTCAAGGCAGATGCTAGCCAACATAAAGATGAGAACACTGATATTATTGAAAAACTCTATCAGAAGGTTAAAATTCTTTGCTGGGTAATGACAGGGACCTCATCAGCTAGAGAAAAGGGTCAAGAACATCAAAGCTTCATGGGCCCAGTGTTGTAATAAAGTGTCATAAAGACTTCCATAGTATGATTTAAAACCACTGAAGATGGCCCAGCTCTGCTGGAAACAATTAGAGCCTTTCAGTTTGTTCATGACTGTTGTTTAGAAGATGCTTATTGGTTCGTGGAAGCAGACTATGATGCACATGTCCTACTAGACAACTTGAGATGGCTTATCTTAAACTATGATCCTGAAGAACCCATTTACTTCCGGAGAAGAT
>XM_014739098.2
aaggagttggggagtgagctatAAATACACTTTCGGGAAATGGCCTCTAAATCTTGGCTGAATTTTTTAACCTTCCTCTGTGGATCAGCAATTGGATTTGTTTTATGTTCTCAGCTATTTAATATTTTGTTGGGAGAGCAAGTTGACACCCAGCCTAATATTCTTCATAATGACCCTCATGCTAGGCATTCAGATGATGATGGACAGAATCATCTAGAAGGACAGATGAACTTCAATGCAGATGCTAGCCAACATAAAGATGAGAACACAGACATCGCTGAAAGCCTCTATCAAAAGGTTAAAATTCTTTGCTGGGTTATGACAGGGCCTCAAAATCTAGAGAAAAAGGCCAAACATGTCAAAGCTACATGGGCCCAGCATTGTAATAAAGTGTTGTTTATGAGTTCAGAAGAAAATAAAGACTTCCCTACTATAGGATTAAAAACCAGAGAAGGCAGAGACCAACTATACTGGAAAACAATTAAAGCTTTTCAGTATGTTCATGATCATTATTTAGAAGATGCTGATTGGTTTATGAAAGCAGATGATGATACATATGTTATACTAGACAATTTGAGATGGCTTCTCTCAAAGTACAGCCCTGAAGAACCCATTTACTTTGGGAGAAGATTTAAGCCCTATGTAAAGCAGGGCTACATGAGTGGAGGAGCAGGATATGTACTGAGCAAAGAAGCCTTGAAGAGATTTGTTGTTGCATTTAAGACAGAAAAATGTACACATAGCTCCTCCATTGAAGATTTAGCACTGGGGAGATGCATGGAAATTATAAATGTAGAAGCAGGAGATTCCAGAGATACCACTGGAAAAGAAACTTTTCATCCCTTTGTACCAGAACATCACTTAATCAAGGGTTATCTACCTAGAACCTTTTGGTACTGGAATTATAACTATTATCCTCCTGTAGAGGGTCCTGGTTGCTGTTCTGATCTTGCAGTTTCTTTTCACTATGTTGATCCTACAACTATGTATGAGTTAGAATACCTCGTTTATCATCTTCGTCCATATGGTTATTTATACAGATATCAACCTGCCTTACCTAAAAATGTACTAAAGGAAATAAGTCAAAAATACAAAAGTGAAGATCCAAAAGTGAAGTTGGAAAGCCTTGAAAGAAAAACATAAATGAACAGAGGTAAAATGTCTAGCACTGCACTGAAGAACTTCTGCATTTCTGATACAGAACACTGGAATCTCAGTGAGGAATTCTTTCCAAGTGAACATTCCATATTAGAAATCTTTCATATGAATGACTGTAAACTGAAGCTTTAAGTGAGCTGTGAAGTCTGTTAAAATGTGTTTTGATACAGTAATATATATGTGAAAAATTTGTGTTTTTAAAATGGTGGCCAGGCAGAAGGACTAGAAAAGAGATTTGTTGCCTGTTCCTGACCACATGTATTATTTTCGCTGACAACCTAAAACAGTTAAATTTGCTGAAACTACACTGCACCGTGTTAGTAACACACACATGATGGTAAACAGATCTGCCTTAAAGAAAATTTTAGAGTAAATACTGTTGCTCAGTGTTGTTCATAAACTCAAGACATGAGTTTATATTTCCAGTATGATATCTCCCCCCCACACACACATGCGGTTTTTGTCTAATGAAAATTTAGCTGTGGCTATTCGTAATTGGCAGCATTTCTTCCAGAAGAAGATAGAATAAGAATGGCACTTGTCCTAAAGTGCATTAATAAAACCACATTTTGAAATTATCCTGGGCCTTGACTGTATTATATACTTGTTCTAATTAGTAATTAATCTTGTACTGAGTCCCTGTTGTCTCTTTTCTAAATATGTTTAACCATTCTTGAATACCATTCTCAACTATTAGTATTTATTTACTCAAAGCATTAATAGCGTTCTGTAAACATGCATTTTTAAATATTTTGTTCCCCAATTTTCCCATAATAAATAGTAAATTTAATGCTATTTGGGGATGCTTTTCTTGTATCAGTGCCACTCTCAGGAATTACTAAGTGACATTTTTAATTGTTTAAAACTCTTTCCAACTACATAATTATAGTTTCTTTTATTCTCATCCTGTTGAGAGATGAGAATTTGTGCCTTTCATAACTTGTTTGAAGCAGAGCTTTGAAATTCATTTTTAGGATCTGAGGTGGCTATTAGTTAAACTGGCAAAATAATTTGAATACAAGATTTTGATCAGAGTTAATTAAAAATATTAGAAAATGCAGAGTGCTTAAACAAACTCAATATGTCAGATATTAAAAGATATTGAAATAATTTATAAAGAGCCTGAATTTTGATGCTGATGTAGTATTTGGGGATGATTGTCTTGCCAGTGGATAATTCTAACAGAGCAGAGTACCTATTCAAGACTGTCATCAAAAACACATTCATAAATGATTTGTTCTACTAGTGACCCTCTATTTAAAGAATTTCTGAAAGGAAAGAAAATTTTAAATTTTTTGTTGTCTTTAGCAATATTGTTTGACTGTATTGTAACAAAACATTTTACAGACTTTGAATAAGATTATCTTAAATGTTACAAATTTCTCTTATGTTTATAGTTATGCTAATTTTACATGGTTGTCATGCCATTGACTCTGCTGCTTAGCTAAATAGTTTATATTTATTGTGCCAAAACATGTCAAAACCATGACCTCTTTGGATGGTGTATTTGAGAGAATATTCATCTTAGTGGCTAATTATGGACTACGCTGTCTACATAGTGAAAGCTCACACCAGTTTTTATCTATTAAATTGTTTTTTGTTTTCACAATGATATTATCTGCCAAAATTTCAAGGCATTCATTCTATTCTTTGAACAACTCTTCACCTTGGTGTGGATATGAATTTATTTACAGTCCACATATGCAACTTTTCCATACTATAAGTATAAATGGTTTATCGTAAACATCCAAAAAACCTTAAAATTCACTCATAGGAAATtaacattgtgatgaatcctggtgtctggagtcagactacttgggtttaaattcttgctccatcacttactagttttgtaaccttgaccaatttacttaatttctctgtgcctcaatttcctcatctgtaaattagggacaataatactacctacctcacaggatttttttgaggattaaatgagtgaatatttgtatgacttttaagacagtgtctggcccagagtatgtaacaattagtataagattttattattCTGTTACCTCAGAGTGTAAATATTTGTTTTAAATGAATGAAAAATCTGCTTTAATCAAATCAGATGTTGAAGGAAATAGTTCATACATTTCTTATAATGaataatagctagtttttgtctgatgcctactgtatgccagatgctgtgcttagggactctatgtacattagtgttaatcctcacaaattgggtgttattcccatattatggatcagaaaactgaggcttagagaattaaagtaacttttctactgtcacaatgctggtaagtaacagagctaggatttatgctcaagtcctgcgtgTCCTCTGTACCATGTCAAGCCTTGAGGTTAGTCATTTAGCATTATTTCTGTTTTTACTTATTGACATGTGACATCTGATACATTGGCCAGTAATAGTCAAATCAACCAGCCAAATTGTCATagtggttcacaaattttgttcttatactcctgcctggagcttgttaaaatggagatttcaagatcccaattccagaaattctaattctagcatggagcccaggaatatatgttcttatcaggtatccctgggcagtggttcttaaagtatagtcccagccagcaatatcagcatcacctaggaacttgttgaactgcaacctctcctgccctcccaacccccgccaccgggcctactaaatcagaagctctaggggtggagggtagcagttatgtttaaacaagtccttcagtcctgttgatgctagtttgagaaccattgtcctaagacctaggtgattctgatggcaaatgatccttggaacacgctgacaattactgCCCCAGAAGTAAAATGTCTTTCAAAGATTTAGATAAAGCATGTTTTAAATCAGCGTGGTTCAAGATCACACTACATTAAATGTGAAAGACTTTAAAGATAGTTTAAAGGATCAGTGCATCATTCATTTTGGCAAAATTCGTTAGCTTCTTCAGAGTGACTAACATGAGGACCCACAGTAAAATCTGTAATTCTCCAAGGTTAGTAGTTTCACATTGGGGCAGGAAGGGTTCATTAAGTACTAGTAAGTACATACTAATTCATTAAAAGCATACCTAAATAAGTGTCATCAAAAATGTTCACAATTGTTAGTAAAAAATTTAAGTAGAGGTAGCAAAATACTATTATATAATATGCAGAATGTTATTCTGCTAGTTGATATTATCAAAATTTCATCACTTTCAAGAATCAGTTGATTGTCTTATATGTCCTAATAAAGCAAAAAATTCTCCAAGTATTTGATAGAGCACATAAAACCAATTTTCATGATCATAATGACTTATCTTTTAAATTAAGATCTTTATCATTTGGATAAGTGATTTTATTGTGGTCTCAAAACATAAGACTTTTGTTATCTTATGTTTTCTGATCACAGTACACTGGTATTTTCAAATAGGAAGGTCACAGATGATACAAAGCAGAGTTTTGTTCCAGAGTTACACTTATTTGTTTTCAAATACCTTAAATTTTAGAGGAGTTTTTGTTTCTGTAAGAAGATTCTAAAATAAATGACTAGTTTTTTATATTTTTTGAAATATGGTAAAATTAGATTTGAGCATTAAATTTGCTTATAGTTATTGTCATAATTGTTTCTTGAGTATTAATTTTTCAGTTACTTGAGCCTATTAAACTGTATTCCTACCAGATTGAGGCTTGAAAAATCCCTCACTTGATTGATTAGATCAAGTCCATCCTTTTATTTTTCATTTCACTTTTCAGTTCATTAGAGTATTCTTTGTATTTATTACCCTTCATTTCCTCTATAATTAATTTCCATTTTCTAACTACTTTTAATGCTGCCTTTACAGGGTTAATTTGGCTGTTATTAGTGATTAGAATTTGTATCACTTAGTGATAATGTTATACCTATTAACTTTAGGTTTCTCTATGAGATTGGCAGTAAAAATCTGTCCAATAATAATGCCTGCTGGCTCTCAGGATACTTGCCCTGCTTAAACATCTACAATTTTAAACTAATGCTAGGTAGACTATTATTAAATAAAGTTATTTGGATTCCACCACTTCCCTCCCTTCCCTTTTCTCAAAAACAAACAAAAAGCTCAGTTGCCTCATTTCTCTACTTCTTTATAATAGGCCTGACAGAAACATACTTAAGAAATCTGGGGGACAACCTGTGGTTTATTTTATGCTAAATGTAACTTCTATTGATTTTTTTTAAATGACTTATGTTTATATATTGAGTTGAAATAGAAATTTAATACAGCTTAGAATAAGAAATTTTACAAATTCTCTTTAGAGAAAACACTCCAAAACTAGTTTAGAGTTAAATAGTACTCTATTTCAACTCCTTTACCTCTCTAGTTTTCAGTTTATATCAGTTAAGTTTAAATAACTTTGCAGGGCCCTGCAAATTAATAATCCATATAAAGTATATTATTAGAGGGAAACTAATCTTACTGCTAAGCAGTGTGTTATATTACACAGTGAATGTTTGTGTTTTGGAATTTTAAAATTATGTAAGATAATAGTATCATAAATGATTTAAAAATGTCTGGTGACTTGCTTATTTTAAGTGATCACCAATAAGTCAGAAAAATGTATTTTTAAATGTTTTTTCAAGTGCCTTTGAACATTTTTAAACAATGGATTTAAGCAACCGCATAAAATAAATTACCATGTTTAAAGCTG

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