Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name DNAJA1P4
Plot displaying the genomic locations of a retrocopy (in chr31) and its respective parental gene (in chr23). Each line represents a retrocopy.
Species Equus caballus
Coordinates chr31:22067466-22067860  UCSC
Strand +
Parental Sequence XM_023627465.1
Parental seq. overlap 333 bp
Parental seq. overlap (%) 14.3%
Genomic Region Intragenic (ZC2HC1B)
Retrocopy Summary DNAJA1P4, located on chr31:22067466-22067860, is a retrocopy of the parental gene DNAJA1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name DNAJA1
Full Name N/A
Also known as -
Coordinate chr23:49318632-49330209
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa DNAJA1P2
Dolphin Tursiops truncatus DNAJA1P6
Cat Felis catus DNAJA1P4
Velvety free-tailed bat Molossus molossus DNAJA1P10
Greater mouse-eared bat Myotis myotis DNAJA1P8
Kuhl's pipistrelle Pipistrellus kuhlii DNAJA1P4
Egyptian rousette Rousettus aegyptiacus DNAJA1P2
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>DNAJA1P4
TGTGTGTGCTAAATGAAGGCATGCCAATTTATTATAGACATATGAAAAACGTCGCTTACTCACTGAACTTGAGGTAAACTTTCCTGAGAATGGTTTTCTCTCTCTCAATAAACAATCTTTGCTGGAAAAACTACCTGAGAGGAAGGAAGTAGAAGAGACTGAGGAAATGGACCAAGTTTAACTGGTGGACTTTGATGCAAATCAGGAAAGATAGCACCTTTACACGGGAGAAGCATATGAGGATGATGAACATCATCCCAGGGGTGGTGTTCAGTGTCAGACTTCCTAATGGGGCCAGAGGGTAACACTCACTACTGGCACTTTATATGCAGTAGCGAATGAGTGAAGGACTATAATCCTAATATGCTCACTACCTGCTACTGT
>XM_023627465.1
CTCGGCTACAAAAGACCGCGGCTGCGGCGCGTCGGGGGAACTTTCCAGAACGCTCGGTGAGAGGCGGAGGAGCAGCGGCTGCCCGAGCTGCGCACAGCAACGCGCTCTCTCTCGCTCCCCCACCCCGGCCTCGGCCCGCTCACCGGCTGTAGACAATGGTGAAGGAAACTACGTACTACGATGTTTTGGGGGTCAAACCCAATGCCACCCAGGAGGAATTGAAAAAGGCTTACAGGAAACTGGCCTTGAAGTACCACCCTGATAAGAATCCAAACGAAGGCGAGAAGTTTAAACAGATATCTCAAGCTTACGAAGTGCTCTCTGATGCAAAGAAAAGGGAATTATATGACAAAGGAGGAGAACAGGCCATTAAAGAAGGTGGCGCAGGTGGCGGTTTTGGCTCCCCCATGGACATCTTTGATATGTTTTTTGGAGGAGGAGGAAGGATGCAGAGAGAAAGGCGAGGTAAAAATGTTGTACATCAGCTCTCAGTAACCTTAGAAGATTTATATAACGGTGCAACCAGGAAACTAGCTCTGCAAAAGAATGTGATTTGTGACAAATGTGAAGGCCGAGGTGGTAAGAAAGGAGCCGTCGAGTGCTGTCCCAATTGCCGCGGTACTGGAATGCAGATAAGAATCCACCAGATAGGACCTGGCATGGTTCAGCAGATCCAGTCTGTGTGTATGGAGTGCCAAGGCCACGGGGAACGCATCAGTCCTAAAGATAGATGTAAAAGCTGCAACGGAAGGAAGATAGTTCGAGAGAAGAAGATTCTAGAAGTTCATATCGACAAAGGCATGAAAGATGGCCAGAAGATAACATTCCATGGCGAAGGCGACCAAGAACCAGGACTGGAGCCAGGAGACATTATCATTGTTCTAGATCAGAAGGACCATGCTGTCTTTACTCGACGAGGAGAAGACCTTTTCATGTGTATGGACATACAGCTGGTTGAAGCATTGTGTGGCTTCCAAAAGCCAATATCCACTCTTGACAACCGAACCATAGTCATCACCTCTCATCCAGGTCAGATTGTCAAGCATGGAGATATCAAGTGTGTGCTAAATGAAGGCATGCCAATTTATCGCAGACCGTATGAAAAGGGTCGCCTAATCATCGAATTTAAGGTAAACTTTCCTGAGAATGGCTTTCTCTCTCCTGATAAACTCTCCTTGCTGGAAAAACTCCTACCTGAGAGGAAGGAAGTAGAAGAGACTGATGAAATGGACCAGGTAGAACTGGTGGACTTTGATCCGAATCAGGAAAGACGGCGCCATTACAATGGAGAAGCGTATGAGGATGACGAGCATCATCCCAGGGGTGGTGTTCAGTGTCAGACCTCTTAATGGGGCCAGTGACCAACACTCACTGCTGGCATTTTTTATGCGGTAGTGAATGAGTGAAGGACTGTAATCAGAATATGCTCACTACTTGCTATTGTTTTTGTTTTAATATTCAACTATAGTAGTGTTTTAAAAGTTAAATGAAGAATAAACTCAAGTATAAAAGCTCTGACTTTGCCCTGTATGTATGATGACTTCAGTGTGCAAGATAAGTTTAACACCTGTAAAAACTACTTTAAAAAGAATTTTCCCCTAGCGTTTGTTAGGCCATACCTTGTAATTGATTTCAGCTGTGTATGTGGAATAGCTTAGACTGAAATGCCAGGTATATGTATTGACTTCAGTGTATGACCCTTCATTGTAAACTATGAAATTAAAACTGTGTGTTAACTGGCAATCAGACAGAGAACTGACTTTGTAGAGAAGTGTTGGTCTGTATAGCTGTACTCCGTGGGACTCGTGATGCCTCTGCATTTATTCTGTTGCCTCCACTGTACTTGAAGATGGCATGCTCTGTGATTCAGCCTGTGGGTCAGTGATGGAAATGACACCTTTCTACAGAAGGGGTTTATCAGATCTGCTGCTGCTTCAGGCCTTGCACTTACAGGACTGCATTCCCTTCTGCTGTGCCATCTTATTATCATTATTTTTTTAATATCTGTATATTTTTCCTTCTCTCTGGACCATGATAAGCCTCAAGAGTAGTGACTTCTGGAGCAGGGTAACTTAGAAGTTAGTCATAAGACCTAGACATGGAGAGTAATGTGCATGTATGAGTTAGGAAGGTGTTCTTTAGGTATATTACAGGCTGGCTTTAAACAATTTATGCTCCAAAGTAACTGTAATTTAATGTTGGTAGTATAACAAATTATGATGAATAGCTTTAATTGTATGTTTAAAATTCATGTTCACAAGCTTAAATCTGGATATCAGAATTTAGGCAATTCTTGCAATGTGTGAATGTCTCCCTAATATACTGATTACAAAGCA

Publications

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