Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FTH1P6
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Equus caballus
Coordinates chr10:80893781-80893950  UCSC
Strand -
Parental Sequence NM_001252054.1
Parental seq. overlap 145 bp
Parental seq. overlap (%) 20%
Genomic Region Intergenic
Retrocopy Summary FTH1P6, located on chr10:80893781-80893950, is a retrocopy of the parental gene FTH1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FTH1
Full Name N/A
Also known as -
Coordinate chr12:25517164-25519781
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FTH1P26
Chimpanzee Pan troglodytes FTH1P13
Bonobo Pan paniscus FTH1P13
Gorilla Gorilla gorilla FTH1P12
Orangutan Pongo abelii FTH1P12
Green monkey Chlorocebus sabaeus FTH1P6
Crab-eating macaque Macaca fascicularis FTH1P4
Rhesus Macaca mulatta FTH1P4
Baboon Papio anubis FTH1P6
Marmoset Callithrix jacchus FTH1P12
Dolphin Tursiops truncatus FTH1P12
Gibbon Nomascus leucogenys Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FTH1P6
GGCTTTGAAGAACTTTGCCAAATGGTTTCTTCACCAGTCTCATGAGGAGAGAGAACATGCTGGAAACTGATGAAGTTGCAGAACCAAGAAGGTGGCCAAATTGTCCTTTAGGATATCAGGAAACCAGACCATGACCACCGGGAGAGTAGGTTGAATGCAATGGACTGTGT
>NM_001252054.1
ctcagccgtccgccATGACGACCGCGTTCCCCTCGCAGGTGCGCCAGAACTACCACCAGGACTCGGAGGCCGCCATCAACCGTCAGATCAACCTGGAGCTCCACGCCTCCTATGTGTACCTGTCCATGTCTTTCTATTTTGATCGCGATGATGTGGCTTTGAAGAACTTTGCCAAATATTTTCTTCACCAATCTCATGAGGAGAGGGAACATGCTGAGAAACTGATGAAGCTGCAGAACCAACGAGGCGGCCGGATCTTCCTTCAGGACATCAAGAAACCAGACCAGGATGACTGGGAGAATGGGCTGAAGGCAATGGAGTGTGCATTACACTTGGAAAAAAATGTGAATGAGTCACTATTGGAACTGCACAAACTGGCCACTGACAAAAATGACCCCCACTTGTGTGACTTCCTCGAGACTCATTACCTGAATGAGCAGGTGAAAGCCATCAAAGAATTGGGTGACCACGTAACCAACCTGCGCAGGATGGGGGCCCCCGAATCTGGCATGGCAGAGTATCTCTTTGACAAGCACACCCTGGGAGAGTGTGACGAGAGCTAAGTCTCAGGCCAGCTTCCCTCAGCCACCGGGTGACTTCCCTGATCCACCGAGGCAGTGCATGCATGTTGGGGTTACCTTTACCTTTTCTATAAGTTGTACCAAAACATCTACTTAAGTTCTTGGATTTGTACCATTCCTTCAAATAAAGTAATTTGGTACCCA

Publications

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