Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL9P12
Plot displaying the genomic locations of a retrocopy (in chr24) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Equus caballus
Coordinates chr24:26354515-26354825  UCSC
Strand -
Parental Sequence XM_001498163.6
Parental seq. overlap 273 bp
Parental seq. overlap (%) 23.2%
Genomic Region Intergenic
Retrocopy Summary RPL9P12, located on chr24:26354515-26354825, is a retrocopy of the parental gene RPL9. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL9
Full Name ribosomal protein L9
Also known as -
Coordinate chr3:89994214-89998934
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes RPL9P22
Bonobo Pan paniscus RPL9P20
Gorilla Gorilla gorilla RPL9P20
Orangutan Pongo abelii RPL9P23
Gibbon Nomascus leucogenys RPL9P29
Green monkey Chlorocebus sabaeus RPL9P26
Crab-eating macaque Macaca fascicularis RPL9P12
Rhesus Macaca mulatta RPL9P12
Baboon Papio anubis RPL9P13
Golden snub-nosed monkey Rhinopithecus roxellana RPL9P10
Marmoset Callithrix jacchus RPL9P18
Mouse lemur Microcebus murinus RPL9P5
Human Homo sapiens Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL9P12
GAGGTCTGCGTATGCTCACCGCCCCATCAACATTGTCATTCAGGAGAATGGGTCTCTTGTTGAAATCCAAAATTTCTTGAGTAAAAAAGGCATCCATAAAATTCAGATGAGGCCAGGTGCTGCTTGTTCACTATCTCAAGCCCAGAAAGATGAGTTAATTCTTGAAGTAAACGACATTGAACTCGCACCAAATTTGTTGCGTTGATTCAGCAAGCCACAGCAGTTAAAACAAGGATATCAGAAAATTTTTAGATAGTATCTATGTCTCTGAAAAAGGAACAGTTCAGCAGGTTGATGAAAAAGATCTAAGA
>XM_001498163.6
TTTACCCTAGAGGCGTCGCGCCCTCATGACGCCATGCGCAGGGCTTTTTCCGGCTACAAGAACGTGATGACGAAAAACGTTCTCTCTTTGCCGCGTCTACTGCGAGAATGAAGACCATTCTCAGCAATCAGACCGTCGACATTCCGGAAAATGTCGACATCACTCTGAAGGGACGCACAGTTATTGTGAAGGGCCCCAGGGGAACCCTCCGGAGGGACTTCAATCACATCAACGTGGAACTCAGTCTCCTTGGCAAGAAGAAGAAGAGGCTCCGAGTTGACAAATGGTGGGGAAACAGAAAGGAGCTGGCTACCGTCCGCACGATCTGTAGTCACGTCCAGAACATGATCAAGGGTGTTACGCTGGGCTTCCGTTACAAGATGAGGTCTGTGTACGCTCACTTCCCCATCAACGTCGTCATTCAGGAGAATGGTTCTCTTGTTGAAATCCGAAATTTCTTGGGTGAAAAATACATCCGCAGGGTTAGGATGAGGCCAGGCGTTGCTTGTTCAGTATCTCAAGCCCAGAAAGATGAGTTAATTCTTGAAGGAAATGACATTGAACTTGTATCAAATTCAGCTGCTTTGATTCAGCAAGCCACAACAGTTAAAAACAAGGATATCAGAAAATTTTTGGATGGTATCTATGTTTCTGAAAAAGGAACAGTTCAGCAGGCTGATGAATAAGATGTAAGTTGTCCAGCTACAGAAATAGCAAGATGGCGGAAGATTCCTGAGACTTATTTGTGATATTTTAAAAGATGCAATAAAAGCTGTGTATTGATTTGGGACTTTTTCTTAAACTGAATTCTTTCTAACTATTTGGCAAGTAAACAGTTAAGAAATAAATTCTGGTGTGTTAAGAACAATAATGGAAGCAATGGAACAGGAGTTTTTTCTAGTAAGACTTCATGGGACAAGACTTGAAATATCAAGGGTGTTTCAGGCAAGAGCAGTATGGTACCCGTGAAAGGCAACAGCACTATAGGCTATTCATCATTGGATATAGAACTTTGGGGAGTGTCCAAAGGTATCTATAATTTTGCAGAGTCAGGAATTTGAGTATTTGTGAGGCAAGTGTGCCTGAGTCACTTGTTTGTATATGAGTAACTTTGTGAAAAAGTGCCTGAAAAGTGGAACAGAGATAACAGTTTTAGTAAAAGTTGGAAGATGAAA

Publications

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