Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL36AP3
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr1:138695497-138695861  UCSC
Strand -
Parental Sequence XM_024240843.1
Parental seq. overlap 322 bp
Parental seq. overlap (%) 54.1%
Genomic Region Intergenic
Retrocopy Summary RPL36AP3, located on chr1:138695497-138695861, is a retrocopy of the parental gene RPL36A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL36A
Full Name N/A
Also known as -
Coordinate chrX:95823719-95828709
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL36AP10
Chimpanzee Pan troglodytes RPL36AP2
Gorilla Gorilla gorilla LOC101135216P2
Green monkey Chlorocebus sabaeus RPL36AP29
Crab-eating macaque Macaca fascicularis LOC102125097P3
Rhesus Macaca mulatta LOC703365P3
Baboon Papio anubis LOC101006882P1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104659583P30
Marmoset Callithrix jacchus LOC100407306P22
Bonobo Pan paniscus Without Homology
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL36AP3
CTTTCCGTGCTGATAGTGCTCCAGCAAACATGGCAAACATTCTTAAAACCCACCCGACATTCTGTAAGAAGTGTGGCAAGCACCAACCCCACAAAATGATACAGTACAGGAAGGGCAAGGATTCTCCATATGCCCAGGAAAAGTGGCATTATGACAGGAAGCAGAGTGGCTATGGTGGGCAAACTAAGCTGGTTTTCTACAAAAAGGCTAAAAGTACAAAGAATATTGTGCTGAGGCTTCAGTGTGTTGAGACTAACTGCAGATCTAAGAGAATGCTGGCTATGAAGAGATGCAAGCATTTTGAACTGGGAGGAAATAAGAAGATAAAGGGCCAAGTGATATCCAGTTCTAAGAATCATCTTTTG
>XM_024240843.1
GTCGGGGTGAGTGGACCACCCTTTAGGCGGAGTCCTTCCTTAAGCTCCCGCCCGCGGCTCCGAACTGAGTCCTCTCAGCCGCCCGAGGGCGCTGCGCTGAGCCTTATACTCTATGATTGCTCCTACCGACTCCCATGAGGAAGTGCGATCGGGAACCTCCTATATACTTCCGTTTGCGGCGCGGCTTCTTTCTTTCCGTGCCGATAGCGCTCACGCAAGCATGGTTAACGTCCCTAAAACCCGCCGGACTTTCTGTAAGAAGTGTGGCAAGCACCAACCCCATAAAGTGACACAGTACAAGAAGGGCAAGGATTCTCTCTATGCCCAGGGAAAGCGGCGTTATGACAGGAAGCAGAGTGGCTATGGTGGGCAAACTAAGCCGATTTTCCGGAAAAAGGCTAAAACTACAAAGAAGATTGTGCTAAGGCTTGAGTGCGTTGAGCCCAACTGCAGATCTAAGAGAATGCTGGCTATTAAAAGATGCAAGCATTTTGAACTGGGAGGAGATAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTAAGTGTCATCTTTTATTATGACGACAATAAAATCTTGAGTTTATGTTCACTTCA

Publications

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