Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name SNRPGP4
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Equus caballus
Coordinates chr17:21523643-21523841  UCSC
Strand -
Parental Sequence XM_003362978.4
Parental seq. overlap 185 bp
Parental seq. overlap (%) 30.5%
Genomic Region Intragenic (SETDB2)
Retrocopy Summary SNRPGP4, located on chr17:21523643-21523841, is a retrocopy of the parental gene SNRPG. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SNRPG
Full Name small nuclear ribonucleoprotein polypeptide G
Also known as -
Coordinate chr15:33229256-33237801
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Mouse lemur Microcebus murinus LOC105863278P14
Pig Sus scrofa SNRPGP2
Dolphin Tursiops truncatus SNRPGP10
Panda Ailuropoda melanoleuca SNRPGP6
Cat Felis catus SNRPGP1
Velvety free-tailed bat Molossus molossus SNRPGP13
Greater horseshoe bat Rhinolophus ferrumequinum SNRPGP2
Egyptian rousette Rousettus aegyptiacus SNRPGP3
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SNRPGP4
TTGAAAAAATGTATGGACAAGAAGTTATCATTGAAATTAAATGGTGGCAGACATGTCCAAGGAATATTGCTGGGATGTGATCCCTTTATGAATCTGGTGATAGATGAATGTGTGGAGATGGCAGCTGGTGGGCAACAGAACAATGTTGGCATGGTGGTAATAGGAGGAAATTGTATCATCATGTTGGAAGACTTGGAAA
>XM_003362978.4
CAGACAATCGATTGGTTCACGGGCTCAGCGACGTCAGACGCAAAACGCCGGGCCTGCCGCGGGAGCGTAAGGGAAGCCGTGAATTGCGTTTGGAGGCATCTTTGAGCTCGGTGAGAAGACATCATGAGCAAAGCTCACCCTCCTGAGTTGAAAAAATTTATGGACAAGAAGTTATCATTGAAATTAAATGGTGGCAGACATGTCCAAGGAATATTGCGGGGATTTGATCCCTTTATGAATCTTGTGATAGACGAATGTGTGGAGATGGCAACTAGTGGGCAACAGAACAATATTGGAATGGTGGTAATACGAGGAAATAGTATCATCATGTTAGAAGCCTTGGAACGAGTATAAACGAAGGCTGTGTTCCCCAGAGAAATCAGCTCCTTCCACATGTCCCTGCTCCACAGCACCTGTTTTACTCCAACATAAAAATTGGGTCATGTACATTTTCGTATTGAACTTTTTTGTTAAATAAACTTTTGTAATAGGCAAAAATGCTTTCTCAGATGTTCTGAGCATAGAAAATAGAATATTAGCCCTTATTCTAATTTTTTCTAACATGAACTTATTCCTGCGAGTCTGATTAAATGTGAAACATGGCAA

Publications

PMID - Link Title