Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name UBE2G1P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Equus caballus
Coordinates chr1:76983330-76983643  UCSC
Strand -
Parental Sequence XM_023653287.1
Parental seq. overlap 278 bp
Parental seq. overlap (%) 7.1%
Genomic Region Intragenic (GGPS1)
Retrocopy Summary UBE2G1P1, located on chr1:76983330-76983643, is a retrocopy of the parental gene UBE2G1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name UBE2G1
Full Name ubiquitin conjugating enzyme E2 G1
Also known as -
Coordinate chr11:48048420-48154907
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UBE2G1P1
Chimpanzee Pan troglodytes UBE2G1P1
Bonobo Pan paniscus UBE2G1P1
Gorilla Gorilla gorilla UBE2G1P1
Orangutan Pongo abelii UBE2G1P1
Gibbon Nomascus leucogenys UBE2G1P1
Mouse lemur Microcebus murinus UBE2G1P1
Cow Bos taurus UBE2G1P3
Dolphin Tursiops truncatus UBE2G1P2
Sloth Choloepus didactylus UBE2G1P1
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>UBE2G1P1
ATCATGATTAGTGTCATTTCTATTCTGGCAGACCCTAACGGAGACATACCTGCTAATGTCAATGCCTCAAAAGGATGGAGGGAAGACAGACATGGAGAAGGCAAAAGGAAAGTTTCCTCCTGTTTTAAGGAAAAGCCGAGAGACTGCTTTTGAGTGACATTTATTCAGCAACTAGTAACTTCACTTATTTCAGAGTCTCCCATTGAGAAACATAGCACTGTTTCTCCTGCACTGTACCCTTCTCTTGCTGGACTTCTTTTATAACAAGTTGGCAAACACTGGCTGGAACTGGGCTGCCATAAAACATGCCAGTT
>XM_023653287.1
GGGGGAAGGCACCAGTGGGGCCGACGGGCGGGTTGAAGGAGGGAAGCGGGCGAGCGAAGTCCCAGTGCGCGCCGCGGCGGCCCGGTACCCTCCCCTTCCGGGCGCTGTGAGGAGAGCTGAACGGAGCGCACTCGCGCCGGCAGCGAGGCGCCGCTCCCGCCGCCGCAGCCCGGCCTCCCTCGGCTTCGGCGCTCCCGTCGTGGGGGCCCGGGTTCCTCAGCACACCCAGCGCCAGCAGCCCCCACAGCCTGTCCCCAGCCCTTCGGAAGCCCCGGCGCCAGCCCGGGCCCTCGGCAGGGAGGATGACGGAGCTGCAGTCTGCACTGCTACTGCGAAGACAGCTGGCAGAACTCAACAAAAATCCAGTGGAAGGCTTTTCGGCAGGTCTAATAGATGATAATGATCTCTACCGATGGGAAGTCCTTATTATTGGTCCTCCAGATACACTTTATGAAGGTGGTGTTTTTAAGGCTCATCTCACTTTCCCAAAAGATTATCCCCTCCGGCCTCCTAAAATGAAATTCATTACAGAAATCTGGCACCCAAATGTTGATAAAAATGGTGATGTATGCATTTCTATTCTTCATGAGCCTGGAGAAGATAAATATGGTTATGAAAAGCCAGAGGAACGCTGGCTCCCTATTCACACTGTGGAAACCATCATGATTAGTGTCATTTCTATGCTGGCAGACCCTAATGGAGACTCACCTGCTAACGTTGATGCTGCGAAAGAATGGAGGGAAGACAGAAATGGAGAATTCAAAAGGAAAGTTGCCCGCTGTGTAAGAAAAAGCCAAGAGACTGCTTTTGAGTGACATTTATTCAACAGCTGTAACTTCACTTATTTCAGGGTCTCCAATTGAGAAACATGGCACTGTTTTTCCTGCACTCTACCCACCTATTGCTGGACTTCTGTTGTAACAAGTTGGCAAACACTGGCTGGAACTGGGCTGCAATAAAACATGCCAGTATCAATGCTGACAAGAGCCTAACAAGTGCCAACTTACCGATGATTACGCATTTTGAATTCTAATGAACTGTTTTAACCTTCAGGAAGAATTGTAAAGACCTGTACATAGCACAACATGATCCGGATAATATATATACTGTTCATGTACATCCACAAATACACCTTGTACCAAATAATGCTTTCTTGTAGTAGAATAAGAATCGTGTAAATTCTAAAAGATTTTAGCAGGTTTTCTTTCCCTATTCATTGTTTCTTATCAGTTTTAAAAGACTCCTTAAAGCATGTCAGATGAAAAGCAATTAGGATTAAAAGTTTCCATTTAGTTTCCTTTAAACCATTGAGGCTTCATTAAACTCTTTTCACTTACTAAACTTTTGTATCTTCTTTGTTTTGACACTCCCCTTTGCTTTTCCTCTCGTCTGTCAGAAAGTTTTCAAATCATTTAATTCAAATACTGAAATACTTAATAAGCAACTACTTGATTTTTAAAGATGACTTCAGAGGAGTGGTCATCACTAGGTGCTTTGTCCTTTTTGTATTCTAGTTGCACCCATCTCTTGGATTGGATGTAGCAATAACATTTTTTGGCTGTTGAGAGCTCTTGAATTCAGTCATTATCCCTGAAAACTAAAAGAGTTGGTTCTGAATTCAACTTCTTCAAATTTACCCCAAACAATACAAAATTCTGATTTGGTTTTATGCCCTCCAGTTGCCTAATGTTAAGGTTGGATGAGTAAAGCATGCACAGCTACAGGCTTTCTTTCTACTTAACTTTTGGATTTGCTATTAAAAATACTGTTCACATTCATATCCTTCTCCTTAGCCCTTCATATTTCTTTGCCTCTATTCTTCTACACTGCAGATTTTTCCCACCTATTGTACAAAGAAATTGCGATGTATATTTTCATGTAATTTGATTTTGGAATTCTGTCACCTTATGTAGTGAGTTCTTCCAAAATATAATTTTTTTCCAATAATTGTCAAGTTGTTGGCTTTTATTGTATTGAATGAAGGTTATAATACTGAATGCCAGAGAAGTGCAGTTTAGAAAAATCTCAGGTTGATTCCTTATGCAAACTTAATACTTGAAAATCACATGGCCATGGCAGTCTATGTATTGGGCTCTATCTAGATTCTTATGTGAATCTCAAAGCATTACAGGAGTGTAAATGCGTTGCTATTTGACATATAGATCTGTCACTGACATAGTGCACTTGGATTTTATTAGTGTTTGAGCATAAGTATATTTCATATCATAAGTTTTCTGAAACAACTTCAGGAAATGGTAAAATGAGCATGTGCAGTGTTAAAGGCAGGCCCAGGTTCCTCTATGTTTGGTGTGAGGTTGGGATTGGGAAGTAGTCTTTGGCACGTAAGGGATAAAACTTGAGATAGTGTCAGATGGGACATGGTGTTAATTGTGAGGATCACTGAGAAGTGGTGCATCACTGTTCTGTGGGGTTTGGAGAAGTGCTTTGGCAGAAGAGTGCAAGGATTCCTGCAAGTAGACCAGTCCTCGACAGGCTTTGCATGCCCCTTTTTAAGCAGAAGTTAAATGGTTGAGGATGAAGTCACAGTAGAGAGTAATTTTTCTAAATCCCAGTCTGTTCTCCACTCTGAAGCATAATAAAAGCCCATAAATGTGTAATGACTGAATGTGAAAATTGTCTGACTTGATTCATCGCAGCCCAGTTTTCTTCAAGAGGTTCGTTTGTGACTTTGTTTTTTCAAAGACTCTGTAAAAAAACTATTGCCCCAAAGTGCCAGTACTGCACACCTATCTGGGACTTTGAACGCAATCCCTTTTACTCTTAAATCAGAAATTGTTCACATGGTGGTTGCTCGTGGCAAAATGGAGTCTGAATTTTGCTCTCCTATTGCTGTAATTTGGCTAGCAATCTGTTGAGTTAAAACATGGGATTTGACTCTTGAGGGAGTAGCAAATGACCTAGTAACTCAGGGACAGCTATTCTTGAACTTTAAGTGCCACTTTAATGCAGTGACTTTGGTATAACCACGTGTTATTTAGGGCTAGGTCTAGGGGAAGTAGAAGGGAGAGCCAGGAATGAGTACCCCTCTCTTACACTCCTTTCCATGTAGTGCCTGACAGTGCTACATAGGGAAACACAGGCCACGATAGATGTTTTGACTTCCTTTCCTCTGTCAGAGGTGTCATCTGTGCCTTTCCCAGTGTTCATCTGACAGTGTGAATTTAAATGCCTCTACATTTTATATTAAACCACACTCAGGTGACACTGATCCAGGTGGCTTCTGTCCCACCAGTGCCTCATCATTAGTGTGAGGTGAGTCCTCTCTGCTTTAGGAAAAGGATTTTTGTCCCTAACCTTGTGCCAACTATCAACATCTACATAGTCTAATGGACTGTAGAAGTATTGGCTGTTTCCTAAATTTATTCCAAGTTCTTATAAAGGCTTACAGATTTCAGTCTCTGCTCATTATGGGATGGATGATCTCAGTGGCTTTCTGGCCTCTTTTTGTGAGTATAAAATCCATATGAAGTTGGTTTCATTGTCATTATAAGGTAATATCTTTGTGAGGTTATTCCACTAGTTCTATGATCACTTGGGTGTCATAGTATCTTTAATGGCCTTCATTCTTGGTTGTGAAATTTTATTTTATATGCTCACTCACCCTCTACAAATCTGCCCATTTTGGGTTGTGGTGCCTGTGTATTTTTGCCCGTCTGGTCTACAGTTGGTGGAATTACCTTTTTTGTACTGCCACTTCTCAGCATCTTTGAAATTTGACATAATGTTGCTTCATTCCAGTTTTTTTTAGTTCTGTAATTTGTTGATTGTATTTAACTATGTGAGTTCTGTTGTGATGTTTACTGTATTGTAAAGCACCTCGATCATGTGATGGGTGCTCTATAAATCAATAAATGATGACTTAGAGGCTGTA

Publications

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