Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name USP15P1
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Equus caballus
Coordinates chr15:8658014-8658813  UCSC
Strand +
Parental Sequence XM_023643918.1
Parental seq. overlap 673 bp
Parental seq. overlap (%) 14.1%
Genomic Region Intragenic (TBC1D8)
Retrocopy Summary USP15P1, located on chr15:8658014-8658813, is a retrocopy of the parental gene USP15. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name USP15
Full Name ubiquitin specific peptidase 15
Also known as -
Coordinate chr6:79904850-80040142
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens USP15P1
Chimpanzee Pan troglodytes USP15P1
Gorilla Gorilla gorilla USP15P1
Orangutan Pongo abelii USP15P1
Gibbon Nomascus leucogenys USP15P1
Green monkey Chlorocebus sabaeus USP15P1
Crab-eating macaque Macaca fascicularis USP15P1
Rhesus Macaca mulatta USP15P1
Baboon Papio anubis USP15P1
Golden snub-nosed monkey Rhinopithecus roxellana USP15P1
Marmoset Callithrix jacchus USP15P1
Dog Canis familiaris USP15P1
Panda Ailuropoda melanoleuca USP15P1
Pale spear-nosed bat Phyllostomus discolor USP15P1
Greater horseshoe bat Rhinolophus ferrumequinum USP15P1
Bonobo Pan paniscus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Cat Felis catus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>USP15P1
AAAACCTCCTAGAAAAAACCTTTTGTGAAAATAAAAGATTCCATTGAAGTTTTTACAAAACAAAAGCTAGGTGTTGAAGATCCGTGGTATTATCCAAATTGTCAAGAAGCCACTAAGAAATTGGATTTATGATCCCTGTGTCCAGTACGTGTTACATCTCAAGTGATTTTCTTACAGGAGCTATCTGAGACACAGCTCGTTGATTTAGTGGGTTTTCCTATCACTGAGGTGGATATGTTGGAATTCTAATTAATCCAAATGCAAGGCCTTGCTGCTACAGTTCGATTGCTGTTTCCAACCACTATGGAGGGGCAAGAGGGCACTATACTGCTTTTGCAAGAAAAAAATATGACGGAGAATGGTATTATTTTGATAACTGGAGTGTCTCAGCTGCATCTGAAGGCCAAATTGTGATGAAGGCAGTATAGGTGCTCCTCTGCCAGAAAGGAGGCACTTTCAGTGGGGACTGGCTTTTTCCCTCCACAGGCATCCCATTTAGAAAGTGATGAAGACAGCAGTGGTAACAGTGATACAGAAAATGAAAACTATGCACACTGACTAATGGAAACTCTTAAAGCTGGAAAGAAGAGACCTTCCTGCCGGTGGTATCTGTTGAAGTGATGAAGTTATCTACCAAGTTAAAACAAAAGTCTGAGTTGGGGAGTTTCAGATAACCAAATGAAATCCTTTATCAGATTTTAACTTGTGTAGTGCTTGAAGTGAGACACAATGAAAAGTGTAATAGGAACGTCTCTTAATCCATTTATAATCTTGAATTATGAGCTGCATATATATAGGAA
>XM_023643918.1
CCACAATGCTCTGGGGCGTgccgccgccgtcgccgccgcctccgctgccgcTAGTGGAAGAAGATGGCGGAAGGCGGAGCGGCGGATCTGGACATCCAGAGGTCTGACATCGCGACTCTGCTCAAAACCTCGCTCCGGAAAGGGGACACCTGGTATTTAGTTGATAGTCGCTGGTTCAAACAGTGGAAGAAATATGTTGGCTTTGATAGTTGGGACAAATACCAGATGGGAGATCAAAATGTATATCCTGGACCCATTGATAACTCTGGACTTCTCAAAGATGGTGATGCCCAGTCACTTAAGGAGCATCTTATTGATGAATTGGATTACATACTGTTGCCAACTGAAGGCTGGAATAAACTCGTCAGCTGGTACACATTGATGGAAGGTCAGGAACCAATAGCACGAAAGGTGGTTGAACAGGGTATGTTTGTAAAGCACTGCAAAGTAGAAGTATATCTCACAGAATTGAAGCTCTGTGAAAATGGAAACATGAACAATGTTGTAACACGAAGATTTAGCAAAGCTGACACAATAGATACAATTGAAAAGGAAATAAGAAAAATCTTCAATATTCCAGATGAAAAGGAGACCAGATTGTGGAACAAATACATGAGTAACACGTTTGAACCACTGAATAAACCAGACAGCACCATTCAGGATGCTGGCTTATACCAAGGACAGGTGTTAGTGATAGAACAGAAAAATGAAGACGGAACGTGGCCAAGAGGTCCTTCTGCTCCTAAGTCCCCAGGTGCATCCAATTTTTCAACTTTACCAAAGATCTCTCCTTCATCTCTATCAAATAATTATAACAACATCAACAACAGAAATGTGAAAAACTCAAATTATTGTCTCCCATCATATACTGCTTATAAGAACTATGATTATTCAGAACCTGGAAGAAACAATGAACAGCCAGGCCTCTGTGGCCTAAGTAACTTGGGAAATACGTGTTTCATGAACTCAGCTATTCAGTGTTTGAGCAACACACCTCCACTTACTGAGTATTTCCTAAATGATAAGTATCAAGAAGAACTGAATTTTGACAATCCCTTAGGAATGAGAGGTGAAATAGCTAAATCTTATGCTGAATTGATCAAGCAAATGTGGTCTGGAAAATTTAGCTACGTCACACCAAGAGCCTTTAAGACACAGGTCGGACGTTTTGCACCTCAGTTCTCTGGATACCAGCAGCAGGACTGCCAGGAGCTATTAGCTTTCCTGTTAGATGGACTACATGAAGATTTGAATAGAATTAGGAAAAAACCATATATACAATTAAAAGATGCTGATGGAAGGCCCGATAAGGTAGTTGCTGAAGAAGCCTGGGAAAACCATTTAAAAAGAAATGATTCTATCATAGTAGATATATTTCATGGCCTTTTCAAATCAACTTTAGTTTGTCCTGAATGTGCTAAGATTTCAGTGACGTTTGATCCTTTTTGTTACTTGACACTTCCATTGCCCATGAAAAAAGAACGTACCTTGGAAGTTTATTTAGTTAGAATGGATCCACTTACCAAACCTATGCAGTACAAAGTGGTTGTCCCCAAAATTGGAAACATACTTGATCTTTGTACTGCATTATCTGCTTTGTCAGGAGTACCTGCAGATAAGATGATAGTTACTGATATATACAATCATAGATTTCACAGAATATTCGCTATGGATGAAAACCTTACTAGTATTATGGAACGGGATGATATTTATGTGTTTGAAATTAACATCAATAGGACAGAAGATACAGAGCATGTGGTTATTCCTGTTTGCCTAAGAGAAAAATTTAGACACTCAAGTTACACCCACCATACTGGTTCTTCACTTTTCGGTCAGCCTTTTCTTATGGCTGTACCACGGAACAATACTGAAGATAAACTCTATAATCTCCTGCTTTTGAGAATGTGCCGATATGTCAAAATATCTACTGAAACCGAAGAAACTGAAGGATCCCTACACTGCTGTAAGGACCAAAATATTAATGGGAATGGCCCGAATGGCATACACGAAGAAGGCTCGCCAAGTGAAATGGAAACAGACGAGCCAGATGATGAATCCAGTCAGGATCAAGAACTTCCCTCCGAGAATGAAAACAGTCAGTCTGAAGATTCAGTTGGAGGAGATAATGACTCTGAAAATGGATTATGTACTGAGGACACTTGCAAAGGTCAACTCACGGGACACAAGAAACGATTGTTTACATTCCAGTTCAACAACTTAGGCAATACTGATATCAACTACATCAAAGACGATACCAGGCATATAAGATTTGATGATAGGCAGCTTAGGCTAGATGAAAGATCTTTTCTTGCTTTGGATTGGGATCCAGATTTGAAAAAAAGATACTTTGATGAAAATGCCGCTGAGGATTTTGAAAAACATGAAAGTGTGGAATATAAACCTCCTAAAAAACCCTTTGTGAAATTAAAAGATTGCATTGAGCTTTTTACAACAAAAGAAAAGCTAGGTGCTGAAGATCCCTGGTATTGTCCAAATTGTAAAGAACATCAGCAAGCCACAAAGAAGTTGGATTTGTGGTCCCTGCCTCCAGTGCTTGTGGTACATCTCAAGCGATTTTCTTACAGTAGATACATGAGAGACAAGTTGGATACTTTAGTTGACTTTCCTATCAATGACTTGGACATGTCAGAATTCCTGATTAATCCAAATGCAGGTCCTTGCCGCTATAATTTGATTGCTGTTTCCAACCACTATGGAGGGATGGGAGGAGGACACTATACTGCTTTTGCAAAAAATAAAGATGATGGAAAATGGTACTACTTTGATGACAGTAGTGTCTCAACTGCATCTGAAGACCAGATTGTGTCCAAAGCAGCGTATGTACTCTTCTACCAGAGACAAGACACTTTCAGTGGAACTGGCTTTTTTCCTCTTGACCGAGAAACTAAAGGTGCTTCAGCTGCCACAGGCATCCCATTAGAAAGTGatgaagatagcaatgataatgacaatgatatagaaaacgaaaaCTGTATGCACACTAACTAATGAAAGTCCTAGAAGCCATAAAAGAGAGACTTTCCTGCTGGTGGTATCTATTGAAATGATGAAGTTACCCACCACATTAAACAGAAATCTGAGATGGGGAGTTTCAGATAAGCGAATGTAAATCCTTTATCAGATTTTAACTTGTGCAGTACTTGAAGTGAAACACAATGAAAACTTTAACAGAAATTGTCTCTTAATACATTTACAGTCTTGTATTTACAAGCTAAATATATATAGGAAATCACAAATAAATCCCTTTTAAGTTTGCTGCTGTTTTGATGAATTATGTTTTCTTTAATTTTTTGGATGTGAGTTAATTGATGACAAATGTTAAATTTGTGGATGTTGGTCATTTATTTTGCTCTAATAATACTGCAAGAAAACTATGGCTGAACTTAGTTTTTGGATAATCTAGTTCATGTGCATTAGGCTGCCACGTATACTACTATGATATTTAGCTGCAGTATGAACATGACACATACTGCAGTAGCATTCTTGGAAAACCAAATTTTCAAATCTATCCCTGGTAATCAATGTGGGCCTATTAAAAAACCAAATCATGATACAAGAAACAATCTTGAAAAAGTTGTTTCCTTTTATAGTATCATTAGAAATCCAGATTATAATGTTCATTTTACTGCTACTGTGGAAACAGGTTCTAGATTTCACACTCCATCTAAAGCCATTTTTCAGTTAAATGTAAGTATTTTTTCTGCTATTGGGATCTATTCCTTAGCCATTCAAATTCTTTGTGACTTGCTTTAAAATGCATATCTTTAATCTGGTGTTGGTCCAAAATTAAAATTTTTGCTGTCTGTTTTTCTCTACCCCATTTTTTGGTAATTTGGCAACTTTTAGCGCTCCCAATTATTGTAATATAAGGACATTTAATAGTATTCTGCATCCATAGTAATAATTACATCAAGCTTAGATGAGAAATTTTTTTCATAGATTGGTCTTTAAATCATTAATGGACAATTGGCTTTAAAGGTAGGTCTGTTAACTTTCTTTGTGTGTTCCTGATGGAATTCACCATAGCCTTACAGCTTTTCTCAGAAGGTAACTTATGATAAGAGAATTGGCATTTGCATGTTCCAGAGTCAGAACCTGTACAGTATATACAGCATACAAACCTTGAATTTGATTTTAGTTCACCACATTCAAGGATCCAGGATGCCAAAAATATGTGTGAACATTTGAAACATTTTTTATTTGCTGCTTTTTCCCTTTGATCTAGTTGAAAGAATGTATTGTCAATTGGCATACAATACTGCCTTTAATAGGAAATCTAAACGCTGGGGCACATTTCCCGTATCGACTACCTGAGAAATTGCTTTGTGTCCCACTGTTATTAAAGCAAAAAGTATAATGTTCTTCACTTGAACTAATCAAATACAATAGATTATAAATTGTGTATTGTAAATAAAAGTTCACTCTGTGAGTGCACATTTTGGTAAATTATTTATTTATGTTAGCATTTAAAAGTAAAAAGAAAAAAATGCATTTGACCAGGATAAATGAGGTATGTTGATCATGGCTTTGCTTTATACCTTGATATTAAAGCTGGTTTCTCATCCTGGTATTTTAAAAGCTGCTTTGGGttttttcttttttcttttcttttcctttttttttttttttttAAATGTAAACTAACCTCCTGCATGACAGAGGTTAAAATTTTGTCTGCACTTGAGTTCACTTGAGTTTACATTTGAAATGTGCATGTTTATTTATACAGATTTCAATAAAGCTATTCAAGG

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