Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name YWHAQP2
Plot displaying the genomic locations of a retrocopy (in chr28) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Equus caballus
Coordinates chr28:5350308-5350754  UCSC
Strand +
Parental Sequence XM_001503580.5
Parental seq. overlap 377 bp
Parental seq. overlap (%) 19.2%
Genomic Region Intergenic
Retrocopy Summary YWHAQP2, located on chr28:5350308-5350754, is a retrocopy of the parental gene YWHAQ. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name YWHAQ
Full Name tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta
Also known as -
Coordinate chr15:85049534-85092193
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes YWHAQP4
Gibbon Nomascus leucogenys YWHAQP5
Golden snub-nosed monkey Rhinopithecus roxellana YWHAQP8
Cow Bos taurus YWHAQP2
Panda Ailuropoda melanoleuca YWHAQP8
Cat Felis catus CB2H6orf52P1
Pale spear-nosed bat Phyllostomus discolor C6orf52P1
Velvety free-tailed bat Molossus molossus YWHAQP3
Greater horseshoe bat Rhinolophus ferrumequinum C6orf52P1
Egyptian rousette Rousettus aegyptiacus YWHAQP1
Human Homo sapiens Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>YWHAQP2
GCAAGAAGTTGCGGCTGATCAAGAACCATCGGGAGAGAGTGAGTCTGAACTGAGATCCTTCTGCACCACTGTCCTGCGATTGCTGGTGAAGTACTTAACAGCCAATGCACCTGATCCAGAAAGTCTTTTATTTGAAAACGGAGATTACTTCCAGTACCTTTGTGGCACGTGGTGATGATCAAAAACAAACTCTCGATAATTCCCAAGGAGCTTCCCAAAAGGCTTTTGATATTAAACAAGAAAGAGATGCAACTCGCACACCCGATCGACCCGGGGCTGGCTCTTAACTCTTCTATACTTTACCATGAGGTCCGTCATAACCCAGAGCTGGCCTGCGCGCTGGCTGAAATCCCTTCTGATGAAGCCATCACAGAACTTGATGCGCTGAATGAAGACTCATACAGAGACACACCCTCATCGTGCGGTAGCTGAGAGACAGCCTAACAT
>XM_001503580.5
TGGGCCGTGGGAGCGAGGGCAGCCGCTCGGCGGCCCGCCCCTTGGCTCCGGGGTAGGCTGAGACGGGAGGGTCCTCCGCTAAAGCCAAAAGCGGATCAAAGTGGTGGGATTCGCGCCGCGGCCGCGGAGACGTGAAGGCCCTCCTCGCGCCTCCTCCGATCCGGGTCGGTGCTCGCCCTCGCTGTCCTCTCGCGTCCGTCCCCATGGAGAAGACGGAGCTGATCCAGAAGGCGAAGCTGGCCGAGCAGGCCGAGCGCTACGACGACATGGCCACCTGCATGAAGGCCGTGACGGAGCAGGGCGCCGAGCTGTCCAACGAGGAGCGCAACCTGCTCTCGGTGGCCTACAAGAACGTGGTCGGGGGCCGCCGGTCCGCCTGGAGGGTCATCTCGAGCATCGAGCAGAAGACCGACACCTCGGACAAGAAGTTGCAGCTGATTAAGGACTATCGGGAGAAAGTGGAGTCCGAGCTGAGGTCCATCTGCACCACGGTCCTGGAATTGTTGGATAAATATTTAATAGCCAATGCAACTAATCCGGAAAGTAAGGTCTTCTATCTGAAAATGAAGGGAGATTACTTCCGGTACCTTGCTGAAGTTGCATGTGGTGATGATCGAAAACAAACGATAGATAATTCCCAAGGAGCTTACCAAGAAGCTTTTGATATAAGCAAGAAAGAGATGCAACCCACACACCCAATCCGCCTGGGGCTGGCTCTTAACTTTTCTGTATTTTACTATGAGATCCTTAATAACCCAGAGCTTGCCTGCACACTGGCTAAAACGGCTTTTGATGAAGCCATTGCAGAACTTGATACACTGAATGAAGACTCGTACAAAGACAGCACCCTCATCATGCAGTTGCTTAGAGACAACCTAACATTATGGACGTCAGACAGTGCAGGAGAAGAATGTGATGCGGCAGAAGGGGCAGAAAACTAACTGCATACAGGGTGTCATCTTTATTTCCCTCAAGAAACCTTTTTACACATCTCCATTCCTTATTCCATTTGGATTTCCTATAGCAAAGAAACCCATTCATGTGTATGGAATCAACTGTTCATAGTCTTTTCACACTGCAGCTTTGGGAAAACTCCATTCCTTGATTTGTGTTTGTCTTGGCCTTCCTGGTGTGCAGTTACTGCTGTAGAAAAGTATTAATAGCTTCATTTCATATAACCATAAGTAACTTCCAAACACTTATGTAGAGGACTAAAAATGTATCTGGTATTTAAGTAATCTGAACCAGTTCTGCAAGTGACTGTGTTTTGTATTACTGTGAAGATATGAAAATGTAGTTAATTACAATTTAAAGAGTGTTCTACATAACTTCTTAATTTCTACATTCCCTCCCTTACTCTTCTTCAGGGGTTCCTTTCAGTAAGCAACTTTTCCATGCTCTTAATGTATTCCTTTTTGGTAGGAATCCAGAAGTATTAGATTGAATGGAAAAGTATTTGACATTTGTGGGCTGGGGGGTCGCAAATTGAAACACCTCCTGTATCATATCTGAAGGAGGTCTTGTGTATCTGTGACAACGGGGTTTCCTATTCACTCTTCATTTGCTGCTGTTTAAGTTGACAACTTCCCTTCCCAATAAAAATTCACTTACACCTCCTGCCTTTGTAGTTCTGGTATTCACTTTACTATGTAATAGAAGTAGCATGTTGCTGCCAGAATACAAGCATTGCTTTTGGCAAATTAAAGTGCATGTCATTTCTTAAATACACTAGAAAGGGGAAATAAAAAGTACACAAGTCCAAGTCTAAAACTTTAGTACTTTTCCATGCAGATTTGTGCACATGTGAGAGGGTGTCCAGTTTGTCTAGTGATTGTTATTTAGAGAGTTGGACCACTATTGTGTGTTGCTAATCATTGACTGTAGTCCCAAAAAAGCCTTGTGAAAATGTTATGCCCTATGTAACAGCAGAGTAACGTAAAATAAAATTACATTTTATAAACCA

Publications

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