Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name RPL7AP20
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr4:80771322-80772213  UCSC
Strand -
Parental Sequence XM_002820343.4
Parental seq. overlap 798 bp
Parental seq. overlap (%) 84.3%
Genomic Region Intragenic (TMEM150C)
Retrocopy Summary RPL7AP20, located on chr4:80771322-80772213, is a retrocopy of the parental gene RPL7A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL7A
Full Name N/A
Also known as -
Coordinate chr9:107291890-107295088
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL7AP26
Chimpanzee Pan troglodytes RPL7AP15
Bonobo Pan paniscus RPL7AP17
Gorilla Gorilla gorilla RPL7AP18
Gibbon Nomascus leucogenys RPL7AP28
Green monkey Chlorocebus sabaeus LOC103240161P12
Crab-eating macaque Macaca fascicularis RPL7AP30
Rhesus Macaca mulatta RPL7AP30
Baboon Papio anubis RPL7AP11
Golden snub-nosed monkey Rhinopithecus roxellana RPL7AP7
Marmoset Callithrix jacchus LOC100392033P10
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL7AP20
CTCTCCTCCTACTGCCAAAGGTGCTGAAAGGAAAGAAGGCTAAAGTGAAGAAGGTGGCTCCAGCCCCTGCTGTCGTGAAGAAGCAGAAGGCCAAGAAAGTGGTGAATCCCTGGTTTGAGAAAAGGCCTAAGAATTTTGGCATTGGACAGGACATCCAGCCCAAAAGTGACCTCACTCACTTTGTGAAATTGCCCCACTGTATCAGGTTGCAGAGGCAGACAGCCATCCTCTATAAGCGGCTGCAATTAACCTCTGTAAGTGCTTCCCGCAATTAACCAGTTCACCGTGGCCCTGGACCGCCAAGCAGCCACTGAGTTGCTTAAGCTAGCCCACAGGTACAGACCAGAGACAAAGCAAGAGAAGAAGCAGAAGCTGTTGGCCCGGGCTGAGAAGAAAGCTGCCTGCAAAGAGGATGTCCCCACTAAGAGACCACCTGCCCTTCGAGCAGGAGTTAACACTGTCACCACCTTGGTGGAAAACAAAAAGGCTCAGCTGGTGGTGATTGCACACGATGTGGATCCCACCGAGCTAGTTGTCTTCCTGCCTGCCCTGTGTTGTAAAATGGGGGTCTCTTGCTGCATTATCAAGAGGAAGGCAAGACTGGGACGTCTAGTCCACAGGAAGACCTGCACCACTGTTGTCTTCACACAGGTTAACTTGGAAGACAAAGGAGCTTTGGCTAAGCTGGTGGAAGCTATCAGGACCAATTACAACAACAGATCTGATGAGATCCGCCGTCACTGGGGAGGCAATGTCCTGGGTCCCAAGTCTGTGGCTCACATTACTAAGCTCAAAAAGGCAAAGGCTAAGGAACTTGCCACCAAGCTGGGTTAAATGTACACTGTTGAGTTTTCTGTACATAAAAAACAAAATAATACAAATTTTCCTTCa
>XM_002820343.4
TCTCGCGATCTCCGAGGCCGCATACATATTACCCACAATTCCCTTTCCTTTCTCTCTCCTCCCGCCGCCCAAGATGCCGAAAGGAAAGAAGGCCAAGGGAAAGAAGGTGGCTCCGGCCCCTGCTGTCGTGAAGAAGCAGGAGGCTAAGAAAGTGGTGAATCCCCTGTTTGAGAAAAGGCCTAAGAATTTTGGCATTGGACAGGACATCCAGCCCAAAAGAGACCTCACCCGCTTTGTGAAATGGCCCCGCTATATCAGGTTGCAGCGGCAGAGAGCCATCCTCTATAAGCGGCTGAAAGTGCCTCCTGCGATTAACCAGTTCACCCAGGCCCTGGACCGCCAAACAGCTACTCAGCTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACAAAGCAAGAGAAGAAGCAGAGACTGTTGGCCCGGGCCGAGAAGAAAGCTGCTGGCAAAGGGGACGTCCCCACGAAGAGACCACCTGTCCTTCGAGCAGGAGTTAACACCGTCACCACCTTGGTGGAGAACAAGAAAGCTCAGCTGGTGGTGATTGCACACGACGTGGATCCCATCGAGCTGGTTGTCTTCTTGCCTGCCCTGTGTCGTAAAATGGGGGTCCCTTACTGCATTATCAAGGGGAAGGCAAGACTGGGACGTCTAGTCCACAGGAAGACTTGCACCACTGTGGCCTTCACACAGGTGAACTCTGAAGACAAAGGCGCTTTGGCTAAGCTGGTGGAAGCTATCAGGACCAATTACAACGACAGATATGATGAGATCCGCCGTCACTGGGGCGGCAACATCCTGGGTCCTAAGTCTGTGGCTCGTATCGCCAAGCTCGAAAAGGCAAAGGCTAAAGAACTTGCCACTAAACTGGGTTAAATGTACACTGTTGAGTTTTCTGTACATAAAAATAATTAAAATAATACAAATTTTCCTTCA

Publications

PMID - Link Title