Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HNRNPH1P2
Plot displaying the genomic locations of a retrocopy (in chr28) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Canis familiaris
Coordinates chr28:3849954-3850259  UCSC
Strand +
Parental Sequence XM_038681144.1
Parental seq. overlap 250 bp
Parental seq. overlap (%) 11.5%
Genomic Region Intergenic
Retrocopy Summary HNRNPH1P2, located on chr28:3849954-3850259, is a retrocopy of the parental gene HNRNPH1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HNRNPH1
Full Name heterogeneous nuclear ribonucleoprotein H1
Also known as HNRPH1
Coordinate chr11:2025055-2034321
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HNRNPH1P5
Chimpanzee Pan troglodytes HNRNPH1P2
Bonobo Pan paniscus HNRNPH1P3
Gorilla Gorilla gorilla HNRNPH1P3
Orangutan Pongo abelii HNRNPH1P3
Crab-eating macaque Macaca fascicularis HNRNPH1P2
Rhesus Macaca mulatta HNRNPH1P3
Baboon Papio anubis HNRNPH1P4
Golden snub-nosed monkey Rhinopithecus roxellana HNRNPH1P6
Pig Sus scrofa HNRNPH1P1
Horse Equus caballus HNRNPH1P1
Cat Felis catus HNRNPH1P2
Pale spear-nosed bat Phyllostomus discolor HNRNPH1P2
Greater mouse-eared bat Myotis myotis HNRNPH1P7
Greater horseshoe bat Rhinolophus ferrumequinum HNRNPH1P5
Egyptian rousette Rousettus aegyptiacus HNRNPH1P1
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HNRNPH1P2
GAGAGACCTCAGCTACTGTCTCTCGGGCATGTATGACCACAGATATGGAGATGGCGAGTTCACCGTCCAGAGCACCACTGGACACTGTGTCCACATGAGAGGGCTGCCGTACAAAGCTACCGAGAACGACATTTACAACTTCTTCTCTCCACTCAACCCTGTGAGAGTCCATATTGAGATTGGCCCTGATGGAAGAGTGACGGGTGAAGCTGATGTTGAGTTTGCCACTCACGAAGAAGCTGTGGCAGCTATGTCCAAAGACCGGGCCAACATGCAACACAGATACATAGAACTTTTCCTGAATTC
>XM_038681144.1
GAGAAGTTACGCATGCGTCGGGGCTCTCTGTGACGCAAGGGGGCGGTGCGGGCACCCAGCTGCGCGTGCGCAGAGCTTGTTCAAAGGGCCTTATTTAGGTTGCGCAGGCGCCCGCTGGCCATTTCTTCTCAGCCACGCCGAAGTCGTGTGTTCAGCCTGTGTCGGCCCCGAGACCCAGTAAGAGACGATGATGTTGGGCACCGAAGGCGGAGAGGGGTTCGTGGTGAAGGTCCGGGGCTTGCCCTGGTCTTGCTCGGCGGATGAAGTGCAGCGTTTTTTTTCTGACTGCAAAATTCAAAATGGGGCTCAAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCGAGTGGCGAGGCTTTTGTTGAACTTGAATCAGAAGATGAAGTCAAATTGGCCctgaaaaaagacagagaaactaTGGGACACAGATATGTTGAAGTATTCAAGTCAAACAACGTTGAAATGGATTGGGTGTTGAAGCATACTGGTCCAAATAGTCCTGACACGGCCAATGATGGCTTTGTACGGCTTAGAGGACTCCCCTTTGGATGTAGCAAGGAAGAAATTGTTCAGTTCTTCTCAGGGTTGGAAATCGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCTTCACAGGAAATAGCTGAAAAGGCTCTaaagaaacacaaggaaagaaTAGGGCACAGGTATATCGAAATCTTTAAGAGCAGTCGAGCTGAAGTTAGAACTCACTATGATCCACCACGAAAGCTTATGGCCATGCAGCGGCCAGGTCCCTATGACAGACCTGGAGCTGGCAGAGGGTATAACAGCATTGGCAGGGGAGCTGGCTTTGAACGGATGAGGCGTGGTGCTTATGGTGGAGGTTATGGAGGCTATGATGATTATAATGGCTATAATGATGGCTATGGATTTGGGTCCGATAGATTTGGAAGAGACCTCAATTACTGTTTTTCAGGAATGTCTGATCACAGATATGGGGATGGTGGCTCTACTTTCCAGAGCACAACAGGACATTGTGTACACATGCGGGGATTACCTTACAGAGCTACTGAGAATGACATTTATAATtttttttcacCGCTTAACCCTGTGAGAGTACATATTGAAATTGGTCCTGATGGCAGAGTAACTGGTGAAGCAGATGTCGAGTTTGCAACTCATGAAGATGCTGTGGCAGCTATGTcaaaagacaaagcaaatatGCaacACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTACGGTAGCCAAATGCTAGGAGGCATGGGTTTGTCAAACCAGTCCAGTTATGGTGGCCCAGCCAGTCAGCAGCTGAGTGGTGGTTATGGAGGCGGCTATGGCGGCCAGAGCAGCATGAGTGGATATGGCAGCCAAGGAGCAGTGAGCAGCAGCTACTACAGTAGTGGAAGCCGTGCATCTATGGGAGTGAACGGAATGGGAGGGATGTCTAGCATGTCCAGTATGAGTGGTGGATGGGGAATGTAACTGATCCTGATCACTGACTCTTGGTCAacgttttttaaagaaaaaaaagtttaacagtTTTGCAATACAAGCTTGTGATTGATGCTTATTACTCTAAGTGGGAATCAGGATTGTTTTAAAGACTTAAGGTTCAGTATTTTTGAACACAAACATTCATCTAGGATGTAACACCTGAGTAAACTAGAACTGTTAAACAATTTTCAGCTTTTCTCTAGTTCTATTGTAGGATGTACTTAATAAGCAGCAAGTGTATTTAGGTTAAAGCAGTTGAATTATGTTAAATGTTGCTCTTCTACCACGTTACATTGAACACTGTTGGGATGCATGTTGAAAGACATGCTTTTTTGTAAAACGCAATATAGGATCTGTGTCTACGATTAAAAGTGAACACATTTGGCATGTTTGTTAATTCTAGTTTCATTTAATAACCTCTAAGGCACGTAagtttaagcttttttttttttttttaagttaatgggCAACTTTGAGACGCAACACCATACGTTAGGATTTTGGTCTTGGTGTTTGTATGAAATTCTGAGGCCTTGATTTAAACTTTTCCTTGTATCGTGATTTCCTTTTAGGTGTATTGCGCTAAGTGAAACTtgtcaaataaatcttcttttaaaaactgca

Publications

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