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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC403631P1
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr18). Each line represents a retrocopy.
Species Canis familiaris
Coordinates chr8:14226271-14226648  UCSC
Strand -
Parental Sequence NM_001003080.1
Parental seq. overlap 318 bp
Parental seq. overlap (%) 38.8%
Genomic Region Intergenic
Retrocopy Summary LOC403631P1, located on chr8:14226271-14226648, is a retrocopy of the parental gene LOC403631. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC403631
Full Name N/A
Also known as -
Coordinate chr18:55519637-55522265
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FTH1P21
Chimpanzee Pan troglodytes FTH1P10
Bonobo Pan paniscus FTH1P10
Gorilla Gorilla gorilla FTH1P10
Orangutan Pongo abelii FTH1P9
Gibbon Nomascus leucogenys FTH1P7
Marmoset Callithrix jacchus FTH1P9
Sheep Ovis aries FTH1P8
Horse Equus caballus FTH1P1
Panda Ailuropoda melanoleuca FTH1P6
Cat Felis catus FTH1P4
Greater mouse-eared bat Myotis myotis FTH1P1
Egyptian rousette Rousettus aegyptiacus FTH1P1
Sloth Choloepus didactylus FTH1P19
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Dolphin Tursiops truncatus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC403631P1
GCCAGATCAACCTGGGGCTCTACACCTCCTACATCTACCTATCCACATCTTACTACTTTGACTTTGATGCTGTGACTTTGAAGAACTTCATCAAATGTTTTCTTCACCAATCTCATGAGGAGAGACAACATGCTGAGAAACTGACAAAGCTGCAGGACCAATGACCAGATCTTCCTCAAGGATATCAAGAAACCGTACCGTGAGGACTGGGAAAACAGGCTGAATGCGATGGAGTATGCATTCTACTTGGAAAGTGTGAATCAGTCACTACTGGAATTGCCCAAACTAACCACTGGCAAAAAGCCCCACTTATGTGACTTCACTGAGAGTCATTACCCGAATTAGCAGGTAAAATCCATCAAAGAATTGGATGACCAC
>NM_001003080.1
TTCCTGCTTCAACAGTGCTTGGACGGAACCCGGCGCTCGTCCCCCCTTCCCGGGCCCGCCGCTCAGAGCCAGCCCTCGGCCACCTCCACGCAGCGCTCTCGGACCGCCCCGaggcctccgccgccgccgccccagcgccgcgcagccgccgccgccgccgcctcctcagCCTCCGCCATGACGACCGCGTCCCCCTCGCAGGTGCGCCAGAACTACCACCAGGACTCCGAGGCCGCCATCAACCGCCAGATCAACCTGGAGCTCTACGCGTCTTACGTCTACTTGTCCATGTCTTATTACTTTGATCGCGATGATGTGGCTTTGAAGAactttgccaaatattttctccaccaATCTCATGAGGAGAGGGAACATGCTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGTCGAATCTTCCTTCAGGATATTAAGAAACCAGACCGTGACGATTGGGAGAATGGGCTGAATGCAATGGAGTGTGCATTACACTTGGAAAAGAGCGTGAATCAGTCACTACTGGAACTGCACAAACTGGCCACTGATAAAAATGACCCCCACTTGTGTGACTTCATTGAGACTCATTACCTGAACGAGCAGGTGAAATCCATCAAAGAATTGGGTGACCATGTAACCAACCTGCGCAAGATGGGGGCTCCCGAATCTGGCATGGCAGAGTATCTCTTTGACAAGCACACCCTGGGAAACAGTGATAGTGAGAGCTAACCTTAGGCTGTCTTCCCATAGCCGCAGGGTGACTTCCCTGGTCACCGAGGCAGTGCATGCATGTTGGGGTTACCTTTACCTTTTCTATAA

Publications

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