Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name RPS24P23
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chrX:128314263-128314732  UCSC
Strand +
Parental Sequence XM_009245432.2
Parental seq. overlap 433 bp
Parental seq. overlap (%) 68.9%
Genomic Region Intragenic (GPC3)
Retrocopy Summary RPS24P23, located on chrX:128314263-128314732, is a retrocopy of the parental gene RPS24. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS24
Full Name N/A
Also known as -
Coordinate chr10:57279917-57302692
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS24P19
Chimpanzee Pan troglodytes RPS24P22
Bonobo Pan paniscus RPS24P19
Gorilla Gorilla gorilla RPS24P23
Gibbon Nomascus leucogenys RPS24P21
Green monkey Chlorocebus sabaeus RPS24P22
Crab-eating macaque Macaca fascicularis RPS24P29
Rhesus Macaca mulatta RPS24P29
Baboon Papio anubis RPS24P27
Golden snub-nosed monkey Rhinopithecus roxellana RPS24P11
Marmoset Callithrix jacchus RPS24P64
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS24P23
CTCCTCCCTGGTTGTCTGAGGATAGACAGCCATCATGAACGACACGGTAACTATCCGAACTACAAAGTTCATGACCAACCGACTACTTCAGGGGAAACAAATGGTCATTGATGTCCTTGACCCCAGGAAGGCAACAGTGCCTAAGACAGAAATTTAAGAGTGCCTAAGACAGGAAAAACTAGGCAAAATGTACAAGACCACACCAGATGTCATCTTTGTATTTGGATTCAGAACTCATTTTGGTGGTGGCAAGATAACTGGCTTTGGCATGATTTATGATTCCCTGGATTATGCAAAGAAAAATGAACCCAAACATAGACTTGCAAGACATGGCCTGTATGAGAAGAAAAAGACCTCAAGAAAGCAACGAAAGGAATGCAAGAACCCAATAAAGAAAGTCAGGGGGACCGCAAAGGCCAATGGTGCTGGCAAAAAGCCGAAGAAGTAAAGGGCTGCAATGATGTTATCTG
>XM_009245432.2
AGGCATCGCCGCGGTCAGCCTCGTGGCGCGGCCACGCCCCCACGCCGGCGCTTCCCGGGGTCCTTCCGTGCGCGTTGATATGATTGGCCGGCGAATTGTGGCTCTCTTTTCCTCCTTGGCTGTCTGAAGATAGATCGCCATCATGAACGACACCGTAACTATCCGCACTAGAAAGTTCATGACCAACCGACTACTTCAGAGGAAACAAATGGTCATTGATGTCCTTCACCCCGGGAAGGCAACAGTGCCTAAGACAGAAATTCGGGAAAAACTAGCCAAAATGTACAAGACCACACCGGATGTCATCTTTGTATTTGGATTCAGAACTCATTTTGGTGGTGGCAAGACAACTGGCTTTGGCATGATTTATGATTCCCTGGATTATGCAAAGAAAAATGAACCCAAACATAGACTTGCAAGACATGGCCTGTATGAGAAGAAAAAGACCTCAAGAAAGCAACGAAAGGAACGCAAGAACAGAATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAAGCCGAAGGAGTAAAGGTGCTGCAATGATGTTATCTGTGGCCACTGGATTTTTCACAAGAACAGTAATAAACTAAAAACTTCA

Publications

PMID - Link Title