Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS3AP12
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Canis familiaris
Coordinates chr9:44235677-44236604  UCSC
Strand +
Parental Sequence XM_038688606.1
Parental seq. overlap 686 bp
Parental seq. overlap (%) 58.6%
Genomic Region Intergenic
Retrocopy Summary RPS3AP12, located on chr9:44235677-44236604, is a retrocopy of the parental gene RPS3A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS3A
Full Name N/A
Also known as -
Coordinate chr15:49742595-49746972
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa RPS3AP13
Cow Bos taurus RPS3AP17
Sheep Ovis aries RPS3AP17
Dolphin Tursiops truncatus RPS3AP15
Horse Equus caballus RPS3AP6
Panda Ailuropoda melanoleuca RPS3AP11
Cat Felis catus RPS3AP21
Egyptian rousette Rousettus aegyptiacus RPS3AP17
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS3AP12
ACAGCACCATGGCAGTAGGCAAGAAAAAGCACTTTATGAAAGGCTCAAGAAGGTTGCCAAGAAGAAAATGGCTAATCCATTTTCTAGAAATATGGTATGATGTGAAAGCACCAGCTGTGttcaatataagaaataaaaacactagtcCAGAGCACTCAAGGAATGAAAATTGCATATGATGGCCTCAAGAGTGGTGTTTTTGAAGTATGCCTTGCTGATCTGCTGAATGATGAAGTTGCATTTCGAAAACCTAAGCTAATTACTGAGGATATTCAGGCCAAAAACTGCCTAACTTCCATAGGCATGGATTTTACTAGTGACAAAATGTGCTCCATGATCAAAAATGGCAGACCATGGTTGAAGCTCATATTGATGTCAAGACTACCAATAGTTATTTTCTCTGTCTATTCTATTGTTGGTTTTACTAAAAATCTCAatagtcagaaaaaaattctcaataatcAGATTTGGAAGACCTCTTCTGCTAACTACCAATAGGTCTGCCAAATCCAGGAGAAgatggaaatcatgacctgagaggtaCAAACAAATGACTTGAAAGAAGTCAATAAACTGCTTCCATGCTGCATTAGGAAAGACATAGAAAAGGCTTGCCAATCTGCTTCTTCACTCTATGATGTCATTGTTTGAAAAGTGAAGATGCTGAAAACCCTGAGTTTGTACTGGGAAATCTCATGGGGCTTCATGATGAAGGTGGTAGCTCTGAAAAAATGACTTAGGATGAGACAGGTGCTGAAGTTGAACAAGTTGATAGATATGAGCCACCAACCCAAGAAGCTGTTTAAAATTCAGACTTTTAATGGTGAC
>XM_038688606.1
CAAGATCGAAGGTCACGTAGATGGCACGCCTCTCCCAGGACGCCTAAGTTCTCGCGTGAGTTGCACTTCCGCCCTTTTGGCTCCCGCAGCAGCGCCATGGCGGTCGGCAAGAACAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGatccattttctaagaaagattgGTATGATGTGAAAGCGCCAGCTATgttcaatataagaaatattggaaaaacacTAGTCACAAGAACTCAAGGAACCAAAATTGCGTCTGATGGTCTCAAGGGTCGGGTTTTTGAAGTTAGCCTTGCTGATCTGCAGAATGATGAAGTTGCATTTAGGAAATTCAAGCTAATCACTGAGGATGTGCAGGGCAAAAACTGCCTGACTAATTTTCATGGCATGGATCTTACCCGTGACAAAATGTGCTCCATGGTCAAAAAATGGCAGACCATGATTGAAGCTCATGTTGATGTAAAGACTACCGATGGTTATTTGCTTCGTCTATTTTGTGTTGGTTTTACTAAAAAACGCAATAATCAGATTCGGAAGACCTCTTACGCTCAGCACCAACAGGTCCGCCAAATTCGGAAAAAGATGATGGAAATCATGACCCGAGAGGTGCAAACAAATGACTTGAAAGAAGTGGTCAATAAACTGATTCCAGACAGCATcggaaaagatatagaaaaagcttGTCAGTCTATTTATCCACTCCATGATGTTtttgttagaaaagtaaaaatgctgaagaaGCCCAAGTTTGAATtgggaAAACTCATGGAGCTTCATGGTGAAGGTAGTAGTTCTGGAAAAGCTACGGGGGATGAGACCGGTGCTAAAGTTGAACGAGCTGATGGATATGAACCACCAGTCCaagaatctgtttaaaattcagacatttaatggtgaccaataaaaacatatttgtgatgtttaatttcttatcattctttttaaataatcaggCTCGGTGAAGCAGATGTTTTGAACTGACCGTGTGAACTTTTCAGAACTATTGTATGGATCTTATCCATTGCTCTTGGCTACTAAATAGCTGCAAAAGGGTAGTGATCTATTTTAAGCTGTAGTGATCTGGATGGAAGTGTTCTAGATggttaataaaaggaaacttttttaaCGTG

Publications

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