RCPedia: Rtcs

Summary

Retrocopy Name	SUMO2P9	Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species	Canis familiaris
Coordinates	chr8:47635204-47636106 UCSC
Strand	+
Parental Sequence	NM_001252289.1
Parental seq. overlap	762 bp
Parental seq. overlap (%)	73.4%
Genomic Region	Intragenic (LIN52)
Retrocopy Summary	SUMO2P9, located on chr8:47635204-47636106, is a retrocopy of the parental gene SUMO2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	SUMO2
Full Name	N/A
Also known as	-
Coordinate	chr9:5968618-5981517
Strand	+
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Mouse lemur	Microcebus murinus	SUMO2P5
Cow	Bos taurus	SUMO2P4
Sheep	Ovis aries	SUMO2P6
Dolphin	Tursiops truncatus	SUMO2P2
Horse	Equus caballus	SUMO2P8
Cat	Felis catus	SUMO2P9
Pale spear-nosed bat	Phyllostomus discolor	SUMO2P3
Greater mouse-eared bat	Myotis myotis	SUMO2P2
Kuhl's pipistrelle	Pipistrellus kuhlii	SUMO2P2
Sloth	Choloepus didactylus	SUMO2P13
Human	Homo sapiens	Without Homology
Chimpanzee	Pan troglodytes	Without Homology
Bonobo	Pan paniscus	Without Homology
Gorilla	Gorilla gorilla	Without Homology
Orangutan	Pongo abelii	Without Homology
Gibbon	Nomascus leucogenys	Without Homology
Green monkey	Chlorocebus sabaeus	Without Homology
Crab-eating macaque	Macaca fascicularis	Without Homology
Rhesus	Macaca mulatta	Without Homology
Baboon	Papio anubis	Without Homology
Golden snub-nosed monkey	Rhinopithecus roxellana	Without Homology
Marmoset	Callithrix jacchus	Without Homology
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Pig	Sus scrofa	Without Homology
Panda	Ailuropoda melanoleuca	Without Homology
Velvety free-tailed bat	Molossus molossus	Without Homology
Greater horseshoe bat	Rhinolophus ferrumequinum	Without Homology
Egyptian rousette	Rousettus aegyptiacus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>SUMO2P9
AGTGCAGACCTGGTACCTCTTTTGTGAAGTGGCAGCTGAGGAGCTCCAGTTCTCACCTTGGTCAGCGAAAAACCCGAGGAAGGAAGAAGTCAAGACTAAGAGCAATAGTCATATTAACTTGAAGGTGGCAGGGCAGGATAGGTCTGTGGTGCAACTTAAGAGGCATACACTACTCAGTCAACCACTGAAGGCCTATTGTGCACAACAGTGTTTATCAGTGAGGCAGTTCAGATACCAATTCACAAAAGAGATACACCTGCACAAATGGAAATAGAGTTTGAAGATACAGTTTACGTGTTCCAGCAGCAGACAGGAAATGTCTAATACAAAGAGAACCTGCTGTCTACTCCAAAACTCAGTTCCTACAGAGCACAGACACATTCTCCAAAAACTGCCATTTCGTTCCACCACACCCTGACCACTGCAGTAtggatttctctcttctttgattTTCACCTTCCTCATTCCTTCATTATACATAAAGTAACTGGTGTATGTACACAAGCatatggcctttttaaaaaactaaatgaccAGTGGTATGTTCTGGTATCCGGTATCAAATGGATATGGCATGGTATAAAATATTGGTTCAGGGAAAATATCCCTTTCCTCCATTAGTGGCATGCTCATTCAGCTTTTGTCTTGTATTCCAGTAAATTATTTTGTTCTCACagtttaatataaaaaaacaagaaaaaaaattcttgcataccttgttcatttggaaaattttaatgtttttcatttatcattgtaAAACCAAGGACAATTGTATAACTTCTTTGTACATAGCTGTTACACATAGGGCATTTTGTCTTTAAGTAGAGAGAAATTGCTCTAAAGAAATGAATCCAAGGTAGTTTTCCCATCAAGTGTCTCTGCTTAAATAAACTTCTTGTT

>NM_001252289.1
CGACGTGCGCGcgccctctccctcctccaccgCTGCCGCCTCCTTCTTCTGCCGCTCCTGGTGCTGCTTGTGTGCTCGTTCGGTGCGGACCTGGTACCTCTTTTGTGAAGCGGCAGCTGAGGAGACTCCGGCACTCGCCATGGCCGACGAAAAGCCCAAGgAAGGAGTGAAGACTGAGAACAACGATCATATTAATTTGAAGGTGGCGGGGCAGGATGGTTCTGTGGTGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGTTTGTCAATGAGGCAGATCAGATTCCGATTTGATGGGCAGCCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGATGAAGATACAATTGATGTGTTCCAGCAGCAGACAGGAGGTGTCTACTAAAAAGGGAACCTGCTACTTTACTCCAGAACTCTGTTCCTCCAGACCAAGAAGACATTCTCAAATAGAAAGCCGTAATTTGGTTCCACCACATCCTGACTACTACAGTAtagttttctctattctttcattttccccttccccattcCTTTATTGTACATAAAGTAACTGTGTATGTGCACAagcatattgcatttttttttttttaactaaatggcCAATGGTATGTTTTGATCGACATCAAATGGAGATGGGATGGGGGAAAATACTGCTTCTGTGAAAATACCCCCTCTCTCCATTAGTGGCATGCTCAGTCAGCTCTTATCTTTATATTCCAGTAAGTTATTTTGCTCTCactgtttaacaaaaaaaaaagaacaacataaaaatCCTTGCATACCTTGTTCGATtggagaattttaatgtttttcatttatcattgtaAAACCAAGGacaattttataacttttttgtaCGTAGCTGTTACATGTAGGGCAATCTGTCTTTAAGTAGGGATAAAttactctaaaagaaatgaatcctAGATAGTTTTCCCTTCAAGTCAAGCGTCTTGttgtttaaataaacttcttGTT

>NM_001252289.1 

CGACGTGCGCGcgccctctccctcctccaccgCTGCCGCCTCCTTCTTCTGCCGCTCCTGGTGCTGCTTGTGTGCTCGTTCGGTGCGGACCTGGTACCTCTTTTGTGAAGCGGCAGCTGAGGAGACTCCGGCACTCGCCATGGCCGACGAAAAGCCCAAGgAAGGAGTGAAGACTGAGAACAACGATCATATTAATTTGAAGGTGGCGGGGCAGGATGGTTCTGTGGTGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGTTTGTCAATGAGGCAGATCAGATTCCGATTTGATGGGCAGCCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGATGAAGATACAATTGATGTGTTCCAGCAGCAGACAGGAGGTGTCTACTAAAAAGGGAACCTGCTACTTTACTCCAGAACTCTGTTCCTCCAGACCAAGAAGACATTCTCAAATAGAAAGCCGTAATTTGGTTCCACCACATCCTGACTACTACAGTAtagttttctctattctttcattttccccttccccattcCTTTATTGTACATAAAGTAACTGTGTATGTGCACAagcatattgcatttttttttttttaactaaatggcCAATGGTATGTTTTGATCGACATCAAATGGAGATGGGATGGGGGAAAATACTGCTTCTGTGAAAATACCCCCTCTCTCCATTAGTGGCATGCTCAGTCAGCTCTTATCTTTATATTCCAGTAAGTTATTTTGCTCTCactgtttaacaaaaaaaaaagaacaacataaaaatCCTTGCATACCTTGTTCGATtggagaattttaatgtttttcatttatcattgtaAAACCAAGGacaattttataacttttttgtaCGTAGCTGTTACATGTAGGGCAATCTGTCTTTAAGTAGGGATAAAttactctaaaagaaatgaatcctAGATAGTTTTCCCTTCAAGTCAAGCGTCTTGttgtttaaataaacttcttGTT

Publications

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